miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33602 5' -51.2 NC_007605.1 + 157054 0.66 0.992775
Target:  5'- --aGCA-CAUGGUCuCGGag-CCAGGGa -3'
miRNA:   3'- uuaCGUaGUAUCAG-GUCacaGGUCCC- -5'
33602 5' -51.2 NC_007605.1 + 60746 0.66 0.991688
Target:  5'- -cUGCGUCGUGGgacgaCAGcccCCAGGGg -3'
miRNA:   3'- uuACGUAGUAUCag---GUCacaGGUCCC- -5'
33602 5' -51.2 NC_007605.1 + 44537 0.66 0.987634
Target:  5'- --aGCGUUAcGGcCCAGUauGUCCAGGcGg -3'
miRNA:   3'- uuaCGUAGUaUCaGGUCA--CAGGUCC-C- -5'
33602 5' -51.2 NC_007605.1 + 118071 0.66 0.987157
Target:  5'- --aGCAUCAgaaaAGUgagccccacaaacaCCAGUGUCCAGa- -3'
miRNA:   3'- uuaCGUAGUa---UCA--------------GGUCACAGGUCcc -5'
33602 5' -51.2 NC_007605.1 + 121966 0.67 0.985988
Target:  5'- cGUGCcccgCGUGGggCGGUGUCguGGGg -3'
miRNA:   3'- uUACGua--GUAUCagGUCACAGguCCC- -5'
33602 5' -51.2 NC_007605.1 + 35263 0.67 0.98418
Target:  5'- --cGCcccCAaacuuuGUCCAGaUGUCCAGGGg -3'
miRNA:   3'- uuaCGua-GUau----CAGGUC-ACAGGUCCC- -5'
33602 5' -51.2 NC_007605.1 + 29125 0.67 0.98418
Target:  5'- --cGCcccCAaacuuuGUCCAGaUGUCCAGGGg -3'
miRNA:   3'- uuaCGua-GUau----CAGGUC-ACAGGUCCC- -5'
33602 5' -51.2 NC_007605.1 + 26056 0.67 0.98418
Target:  5'- --cGCcccCAaacuuuGUCCAGaUGUCCAGGGg -3'
miRNA:   3'- uuaCGua-GUau----CAGGUC-ACAGGUCCC- -5'
33602 5' -51.2 NC_007605.1 + 22987 0.67 0.98418
Target:  5'- --cGCcccCAaacuuuGUCCAGaUGUCCAGGGg -3'
miRNA:   3'- uuaCGua-GUau----CAGGUC-ACAGGUCCC- -5'
33602 5' -51.2 NC_007605.1 + 19919 0.67 0.98418
Target:  5'- --cGCcccCAaacuuuGUCCAGaUGUCCAGGGg -3'
miRNA:   3'- uuaCGua-GUau----CAGGUC-ACAGGUCCC- -5'
33602 5' -51.2 NC_007605.1 + 16850 0.67 0.98418
Target:  5'- --cGCcccCAaacuuuGUCCAGaUGUCCAGGGg -3'
miRNA:   3'- uuaCGua-GUau----CAGGUC-ACAGGUCCC- -5'
33602 5' -51.2 NC_007605.1 + 13781 0.67 0.98418
Target:  5'- --cGCcccCAaacuuuGUCCAGaUGUCCAGGGg -3'
miRNA:   3'- uuaCGua-GUau----CAGGUC-ACAGGUCCC- -5'
33602 5' -51.2 NC_007605.1 + 167935 0.67 0.98418
Target:  5'- --gGCAacgaaggCGUAGUCCGccagcGgcagGUCCAGGGg -3'
miRNA:   3'- uuaCGUa------GUAUCAGGU-----Ca---CAGGUCCC- -5'
33602 5' -51.2 NC_007605.1 + 32194 0.67 0.98418
Target:  5'- --cGCcccCAaacuuuGUCCAGaUGUCCAGGGg -3'
miRNA:   3'- uuaCGua-GUau----CAGGUC-ACAGGUCCC- -5'
33602 5' -51.2 NC_007605.1 + 25338 0.67 0.9822
Target:  5'- -uUGUuUCAUAGUCaAG-GUCCAGGa -3'
miRNA:   3'- uuACGuAGUAUCAGgUCaCAGGUCCc -5'
33602 5' -51.2 NC_007605.1 + 74432 0.67 0.980039
Target:  5'- --gGCcagGUUGUGGgCCGG-GUCCAGGGg -3'
miRNA:   3'- uuaCG---UAGUAUCaGGUCaCAGGUCCC- -5'
33602 5' -51.2 NC_007605.1 + 55246 0.68 0.97514
Target:  5'- --cGCAUCAUAGaccgCCAGUaGaCCuGGGa -3'
miRNA:   3'- uuaCGUAGUAUCa---GGUCA-CaGGuCCC- -5'
33602 5' -51.2 NC_007605.1 + 119656 0.69 0.959163
Target:  5'- --gGCAUU--GGUCCGG-GUCCGGGu -3'
miRNA:   3'- uuaCGUAGuaUCAGGUCaCAGGUCCc -5'
33602 5' -51.2 NC_007605.1 + 124603 0.69 0.951141
Target:  5'- -cUGCAUCGUcGUCCGGUGUUCcgugauguAGGc -3'
miRNA:   3'- uuACGUAGUAuCAGGUCACAGG--------UCCc -5'
33602 5' -51.2 NC_007605.1 + 170797 0.69 0.946761
Target:  5'- --gGCAUgGuUAGUCCuGUGUCCAGa- -3'
miRNA:   3'- uuaCGUAgU-AUCAGGuCACAGGUCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.