miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33603 3' -53.7 NC_007605.1 + 66837 0.66 0.9737
Target:  5'- uCGGGGC--CCUUUUUGGUUUg--GCAc -3'
miRNA:   3'- -GCCCCGguGGAGAAACCAAGacaUGU- -5'
33603 3' -53.7 NC_007605.1 + 160382 0.66 0.964698
Target:  5'- aGGGGCCGCCaa-UUGGUUaaggGcUACAu -3'
miRNA:   3'- gCCCCGGUGGagaAACCAAga--C-AUGU- -5'
33603 3' -53.7 NC_007605.1 + 65676 0.66 0.961268
Target:  5'- aCGGGGCCACCggccgUGGUgg-GgACGc -3'
miRNA:   3'- -GCCCCGGUGGagaa-ACCAagaCaUGU- -5'
33603 3' -53.7 NC_007605.1 + 163391 0.66 0.961268
Target:  5'- gGGGGCCACCUUggccaccUUGGc-CUGguccUGCAg -3'
miRNA:   3'- gCCCCGGUGGAGa------AACCaaGAC----AUGU- -5'
33603 3' -53.7 NC_007605.1 + 74820 0.67 0.945261
Target:  5'- -uGGGCCACCUUcUUGGUg--GUAUu -3'
miRNA:   3'- gcCCCGGUGGAGaAACCAagaCAUGu -5'
33603 3' -53.7 NC_007605.1 + 69522 0.68 0.930755
Target:  5'- uGGGGCgaugGCCUCcggGGggCUGUACc -3'
miRNA:   3'- gCCCCGg---UGGAGaaaCCaaGACAUGu -5'
33603 3' -53.7 NC_007605.1 + 103866 0.68 0.914057
Target:  5'- cCGGGGCCuCCUCUg-GGcUCUGg--- -3'
miRNA:   3'- -GCCCCGGuGGAGAaaCCaAGACaugu -5'
33603 3' -53.7 NC_007605.1 + 67246 0.69 0.888414
Target:  5'- gGGGGUUACCUUggUGGa--UGUGCGa -3'
miRNA:   3'- gCCCCGGUGGAGaaACCaagACAUGU- -5'
33603 3' -53.7 NC_007605.1 + 34258 0.7 0.866749
Target:  5'- uCGGGGCCAgCCgccggggUUGGUUCUGc--- -3'
miRNA:   3'- -GCCCCGGU-GGaga----AACCAAGACaugu -5'
33603 3' -53.7 NC_007605.1 + 31189 0.7 0.866749
Target:  5'- uCGGGGCCAgCCgccggggUUGGUUCUGc--- -3'
miRNA:   3'- -GCCCCGGU-GGaga----AACCAAGACaugu -5'
33603 3' -53.7 NC_007605.1 + 28120 0.7 0.866749
Target:  5'- uCGGGGCCAgCCgccggggUUGGUUCUGc--- -3'
miRNA:   3'- -GCCCCGGU-GGaga----AACCAAGACaugu -5'
33603 3' -53.7 NC_007605.1 + 25051 0.7 0.866749
Target:  5'- uCGGGGCCAgCCgccggggUUGGUUCUGc--- -3'
miRNA:   3'- -GCCCCGGU-GGaga----AACCAAGACaugu -5'
33603 3' -53.7 NC_007605.1 + 21982 0.7 0.866749
Target:  5'- uCGGGGCCAgCCgccggggUUGGUUCUGc--- -3'
miRNA:   3'- -GCCCCGGU-GGaga----AACCAAGACaugu -5'
33603 3' -53.7 NC_007605.1 + 18914 0.7 0.866749
Target:  5'- uCGGGGCCAgCCgccggggUUGGUUCUGc--- -3'
miRNA:   3'- -GCCCCGGU-GGaga----AACCAAGACaugu -5'
33603 3' -53.7 NC_007605.1 + 15845 0.7 0.866749
Target:  5'- uCGGGGCCAgCCgccggggUUGGUUCUGc--- -3'
miRNA:   3'- -GCCCCGGU-GGaga----AACCAAGACaugu -5'
33603 3' -53.7 NC_007605.1 + 12776 0.7 0.866749
Target:  5'- uCGGGGCCAgCCgccggggUUGGUUCUGc--- -3'
miRNA:   3'- -GCCCCGGU-GGaga----AACCAAGACaugu -5'
33603 3' -53.7 NC_007605.1 + 51266 0.7 0.86371
Target:  5'- aGGGGCCACCUUcucuaagagggGGcUCUGUGg- -3'
miRNA:   3'- gCCCCGGUGGAGaaa--------CCaAGACAUgu -5'
33603 3' -53.7 NC_007605.1 + 63139 0.71 0.781596
Target:  5'- uGGcGGCCGCCagUCUUUGGggacuUUCUGaUACAc -3'
miRNA:   3'- gCC-CCGGUGG--AGAAACC-----AAGAC-AUGU- -5'
33603 3' -53.7 NC_007605.1 + 147169 1.09 0.005174
Target:  5'- cCGGGGCCACCUCUUUGGUUCUGUACAu -3'
miRNA:   3'- -GCCCCGGUGGAGAAACCAAGACAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.