miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33603 5' -47.3 NC_007605.1 + 85024 0.66 0.999823
Target:  5'- -cUGUACgAUAucCCAUGGgccaGGaUUGGCUGg -3'
miRNA:   3'- uaACAUG-UAUu-GGUACC----UC-AACCGAC- -5'
33603 5' -47.3 NC_007605.1 + 52755 0.66 0.999628
Target:  5'- -gUGU-CAUGGCCAcaaUGGGGUUGuCUGc -3'
miRNA:   3'- uaACAuGUAUUGGU---ACCUCAACcGAC- -5'
33603 5' -47.3 NC_007605.1 + 169672 0.67 0.999092
Target:  5'- ---aUGCGUGACCGUGauGAGggGGCa- -3'
miRNA:   3'- uaacAUGUAUUGGUAC--CUCaaCCGac -5'
33603 5' -47.3 NC_007605.1 + 170210 0.67 0.999092
Target:  5'- ---aUGCGUGACCGUGauGAGggGGCa- -3'
miRNA:   3'- uaacAUGUAUUGGUAC--CUCaaCCGac -5'
33603 5' -47.3 NC_007605.1 + 170732 0.67 0.999092
Target:  5'- ---aUGCGUGACCGUGauGAGggGGCa- -3'
miRNA:   3'- uaacAUGUAUUGGUAC--CUCaaCCGac -5'
33603 5' -47.3 NC_007605.1 + 171270 0.67 0.999092
Target:  5'- ---aUGCGUGACCGUGauGAGggGGCa- -3'
miRNA:   3'- uaacAUGUAUUGGUAC--CUCaaCCGac -5'
33603 5' -47.3 NC_007605.1 + 70949 0.68 0.998343
Target:  5'- --cGUGCAUccAGCCAUGuGuccuuGUUGGUUGa -3'
miRNA:   3'- uaaCAUGUA--UUGGUAC-Cu----CAACCGAC- -5'
33603 5' -47.3 NC_007605.1 + 98217 0.68 0.998343
Target:  5'- -gUGUggACGUGGCCcgGGAGcUGGUg- -3'
miRNA:   3'- uaACA--UGUAUUGGuaCCUCaACCGac -5'
33603 5' -47.3 NC_007605.1 + 7665 0.69 0.995964
Target:  5'- uUUGcgGCAUcACCGUGGAGccgGGCUu -3'
miRNA:   3'- uAACa-UGUAuUGGUACCUCaa-CCGAc -5'
33603 5' -47.3 NC_007605.1 + 109476 0.7 0.988554
Target:  5'- --aGgcCAUGGCCGUGGAGcUGGUg- -3'
miRNA:   3'- uaaCauGUAUUGGUACCUCaACCGac -5'
33603 5' -47.3 NC_007605.1 + 78300 0.72 0.96361
Target:  5'- gGUUGUGCGUGGCCGucaUGGAG--GGCa- -3'
miRNA:   3'- -UAACAUGUAUUGGU---ACCUCaaCCGac -5'
33603 5' -47.3 NC_007605.1 + 134544 0.73 0.942315
Target:  5'- --cGUugAUGACCccUGGAGgUGGCUGu -3'
miRNA:   3'- uaaCAugUAUUGGu-ACCUCaACCGAC- -5'
33603 5' -47.3 NC_007605.1 + 147204 1.07 0.025592
Target:  5'- uAUUGUACAUAACCAUGGAGUUGGCUGu -3'
miRNA:   3'- -UAACAUGUAUUGGUACCUCAACCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.