miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33604 3' -47.4 NC_007605.1 + 148063 1.1 0.016758
Target:  5'- gACAACAUUCCCCGCAAACAUGACAUGg -3'
miRNA:   3'- -UGUUGUAAGGGGCGUUUGUACUGUAC- -5'
33604 3' -47.4 NC_007605.1 + 110460 0.75 0.92421
Target:  5'- gGCGGCgg-CCCCGCGGACA-GACGUc -3'
miRNA:   3'- -UGUUGuaaGGGGCGUUUGUaCUGUAc -5'
33604 3' -47.4 NC_007605.1 + 100750 0.74 0.940344
Target:  5'- cGCGGCAcgCCCCuGCccggcagucuuGAGCGUGGCAUGg -3'
miRNA:   3'- -UGUUGUaaGGGG-CG-----------UUUGUACUGUAC- -5'
33604 3' -47.4 NC_007605.1 + 53467 0.72 0.96881
Target:  5'- uGCAGCGUUCCCUGCAGcUggGACu-- -3'
miRNA:   3'- -UGUUGUAAGGGGCGUUuGuaCUGuac -5'
33604 3' -47.4 NC_007605.1 + 129256 0.72 0.977392
Target:  5'- uACAACAcaaugUCCUGCAGGCAUG-CAUGc -3'
miRNA:   3'- -UGUUGUaa---GGGGCGUUUGUACuGUAC- -5'
33604 3' -47.4 NC_007605.1 + 168878 0.72 0.979823
Target:  5'- cCGGCA--CCCCGCuuuuGGCAUGGCAUu -3'
miRNA:   3'- uGUUGUaaGGGGCGu---UUGUACUGUAc -5'
33604 3' -47.4 NC_007605.1 + 113585 0.71 0.984094
Target:  5'- aGCAAgAaccCCCUGCAGgacACGUGACAUGu -3'
miRNA:   3'- -UGUUgUaa-GGGGCGUU---UGUACUGUAC- -5'
33604 3' -47.4 NC_007605.1 + 136352 0.7 0.990544
Target:  5'- uCAGCGUcCCCCGCAAcaccuuUAUGACAc- -3'
miRNA:   3'- uGUUGUAaGGGGCGUUu-----GUACUGUac -5'
33604 3' -47.4 NC_007605.1 + 128970 0.7 0.991779
Target:  5'- gGCucaGUUCCCCGCAGGCccaAUGACc-- -3'
miRNA:   3'- -UGuugUAAGGGGCGUUUG---UACUGuac -5'
33604 3' -47.4 NC_007605.1 + 23526 0.68 0.997718
Target:  5'- -gAGCAUUCCCaaGCAAACAaaACAUGu -3'
miRNA:   3'- ugUUGUAAGGGg-CGUUUGUacUGUAC- -5'
33604 3' -47.4 NC_007605.1 + 70482 0.68 0.998099
Target:  5'- gGCcGCAUUCCCUGCAucgucuGCGUGGg--- -3'
miRNA:   3'- -UGuUGUAAGGGGCGUu-----UGUACUguac -5'
33604 3' -47.4 NC_007605.1 + 120389 0.68 0.998425
Target:  5'- aGCAugucuGCGUUCCCgggaGCcuGCAUGACAa- -3'
miRNA:   3'- -UGU-----UGUAAGGGg---CGuuUGUACUGUac -5'
33604 3' -47.4 NC_007605.1 + 5050 0.67 0.999135
Target:  5'- uUAAUcguUUCCCCGCccuGCGUGACGc- -3'
miRNA:   3'- uGUUGu--AAGGGGCGuu-UGUACUGUac -5'
33604 3' -47.4 NC_007605.1 + 103523 0.67 0.999135
Target:  5'- -aAAUAcugCCCCGCGAGCGcGACcgGg -3'
miRNA:   3'- ugUUGUaa-GGGGCGUUUGUaCUGuaC- -5'
33604 3' -47.4 NC_007605.1 + 117230 0.67 0.999135
Target:  5'- cGCGcCAggCCCUGCAGuccCcgGACAUGa -3'
miRNA:   3'- -UGUuGUaaGGGGCGUUu--GuaCUGUAC- -5'
33604 3' -47.4 NC_007605.1 + 159815 0.67 0.9993
Target:  5'- gGCGACGcUCCCgGgCAAACAgGGCAg- -3'
miRNA:   3'- -UGUUGUaAGGGgC-GUUUGUaCUGUac -5'
33604 3' -47.4 NC_007605.1 + 105484 0.67 0.9993
Target:  5'- cGCcGCcUUCCCgcgUGCAAACGUGGCGa- -3'
miRNA:   3'- -UGuUGuAAGGG---GCGUUUGUACUGUac -5'
33604 3' -47.4 NC_007605.1 + 19257 0.67 0.9993
Target:  5'- uACAGCGccUUCCUCaGCG-GCAUGACAa- -3'
miRNA:   3'- -UGUUGU--AAGGGG-CGUuUGUACUGUac -5'
33604 3' -47.4 NC_007605.1 + 115768 0.67 0.99955
Target:  5'- gGCAGCAUgCCCCgagcaGCAAACAcgcGGCAg- -3'
miRNA:   3'- -UGUUGUAaGGGG-----CGUUUGUa--CUGUac -5'
33604 3' -47.4 NC_007605.1 + 108705 0.67 0.999643
Target:  5'- gGCAGCAg-CCCCGCGAuucgGCGUuGCAg- -3'
miRNA:   3'- -UGUUGUaaGGGGCGUU----UGUAcUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.