Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33604 | 3' | -47.4 | NC_007605.1 | + | 148063 | 1.1 | 0.016758 |
Target: 5'- gACAACAUUCCCCGCAAACAUGACAUGg -3' miRNA: 3'- -UGUUGUAAGGGGCGUUUGUACUGUAC- -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 167032 | 0.66 | 0.99978 |
Target: 5'- aACAACAggugUUCCUGCcucuGC-UGGCAUGa -3' miRNA: 3'- -UGUUGUa---AGGGGCGuu--UGuACUGUAC- -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 116025 | 0.66 | 0.99978 |
Target: 5'- aAUAACAgggCCCCGUAGACAgucuuuUGugAg- -3' miRNA: 3'- -UGUUGUaa-GGGGCGUUUGU------ACugUac -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 169874 | 0.66 | 0.99978 |
Target: 5'- -gGGCugaCCCCgGCAAACGUGACccGg -3' miRNA: 3'- ugUUGuaaGGGG-CGUUUGUACUGuaC- -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 170412 | 0.66 | 0.99978 |
Target: 5'- -gGGCugaCCCCgGCAAACGUGACccGg -3' miRNA: 3'- ugUUGuaaGGGG-CGUUUGUACUGuaC- -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 170934 | 0.66 | 0.99978 |
Target: 5'- -gGGCugaCCCCgGCAAACGUGACccGg -3' miRNA: 3'- ugUUGuaaGGGG-CGUUUGUACUGuaC- -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 171472 | 0.66 | 0.99978 |
Target: 5'- -gGGCugaCCCCgGCAAACGUGACccGg -3' miRNA: 3'- ugUUGuaaGGGG-CGUUUGUACUGuaC- -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 122174 | 0.66 | 0.999846 |
Target: 5'- gGCAGCcacucgcgggUCCCCGUAAAacauauggaaaggaAUGGCGUGa -3' miRNA: 3'- -UGUUGua--------AGGGGCGUUUg-------------UACUGUAC- -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 63361 | 0.66 | 0.999868 |
Target: 5'- uACGACAg-CCCCGCAAcccugGC-UGACcUGg -3' miRNA: 3'- -UGUUGUaaGGGGCGUU-----UGuACUGuAC- -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 115768 | 0.67 | 0.99955 |
Target: 5'- gGCAGCAUgCCCCgagcaGCAAACAcgcGGCAg- -3' miRNA: 3'- -UGUUGUAaGGGG-----CGUUUGUa--CUGUac -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 159815 | 0.67 | 0.9993 |
Target: 5'- gGCGACGcUCCCgGgCAAACAgGGCAg- -3' miRNA: 3'- -UGUUGUaAGGGgC-GUUUGUaCUGUac -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 100750 | 0.74 | 0.940344 |
Target: 5'- cGCGGCAcgCCCCuGCccggcagucuuGAGCGUGGCAUGg -3' miRNA: 3'- -UGUUGUaaGGGG-CG-----------UUUGUACUGUAC- -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 53467 | 0.72 | 0.96881 |
Target: 5'- uGCAGCGUUCCCUGCAGcUggGACu-- -3' miRNA: 3'- -UGUUGUAAGGGGCGUUuGuaCUGuac -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 113585 | 0.71 | 0.984094 |
Target: 5'- aGCAAgAaccCCCUGCAGgacACGUGACAUGu -3' miRNA: 3'- -UGUUgUaa-GGGGCGUU---UGUACUGUAC- -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 136352 | 0.7 | 0.990544 |
Target: 5'- uCAGCGUcCCCCGCAAcaccuuUAUGACAc- -3' miRNA: 3'- uGUUGUAaGGGGCGUUu-----GUACUGUac -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 120389 | 0.68 | 0.998425 |
Target: 5'- aGCAugucuGCGUUCCCgggaGCcuGCAUGACAa- -3' miRNA: 3'- -UGU-----UGUAAGGGg---CGuuUGUACUGUac -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 103523 | 0.67 | 0.999135 |
Target: 5'- -aAAUAcugCCCCGCGAGCGcGACcgGg -3' miRNA: 3'- ugUUGUaa-GGGGCGUUUGUaCUGuaC- -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 5050 | 0.67 | 0.999135 |
Target: 5'- uUAAUcguUUCCCCGCccuGCGUGACGc- -3' miRNA: 3'- uGUUGu--AAGGGGCGuu-UGUACUGUac -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 105484 | 0.67 | 0.9993 |
Target: 5'- cGCcGCcUUCCCgcgUGCAAACGUGGCGa- -3' miRNA: 3'- -UGuUGuAAGGG---GCGUUUGUACUGUac -5' |
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33604 | 3' | -47.4 | NC_007605.1 | + | 108705 | 0.67 | 0.999643 |
Target: 5'- gGCAGCAg-CCCCGCGAuucgGCGUuGCAg- -3' miRNA: 3'- -UGUUGUaaGGGGCGUU----UGUAcUGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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