Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33604 | 5' | -42.7 | NC_007605.1 | + | 41226 | 0.67 | 1 |
Target: 5'- cAGCGUGg--UGgcUGCcuUUGGG-AUGCa -3' miRNA: 3'- -UUGUACaaaACaaACG--AACCCuUACG- -5' |
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33604 | 5' | -42.7 | NC_007605.1 | + | 144042 | 0.67 | 1 |
Target: 5'- cAGCGUGg--UGgcUGCcuUUGGG-AUGCa -3' miRNA: 3'- -UUGUACaaaACaaACG--AACCCuUACG- -5' |
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33604 | 5' | -42.7 | NC_007605.1 | + | 98514 | 0.67 | 1 |
Target: 5'- aAGCGUGcg-UGUUuaUGCUgUGGG-GUGCg -3' miRNA: 3'- -UUGUACaaaACAA--ACGA-ACCCuUACG- -5' |
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33604 | 5' | -42.7 | NC_007605.1 | + | 55857 | 0.67 | 1 |
Target: 5'- cGCGUGUUUgc--UGCUcGGGGcAUGCu -3' miRNA: 3'- uUGUACAAAacaaACGAaCCCU-UACG- -5' |
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33604 | 5' | -42.7 | NC_007605.1 | + | 55149 | 0.66 | 1 |
Target: 5'- gAGCAUGgccuccgUGUUUGCcugcUGGGGcUGUg -3' miRNA: 3'- -UUGUACaaa----ACAAACGa---ACCCUuACG- -5' |
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33604 | 5' | -42.7 | NC_007605.1 | + | 77952 | 0.68 | 0.999998 |
Target: 5'- aGACAUGUUUUGUgUGCUUuaguaGGucuAUGUa -3' miRNA: 3'- -UUGUACAAAACAaACGAAc----CCu--UACG- -5' |
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33604 | 5' | -42.7 | NC_007605.1 | + | 85805 | 0.69 | 0.999997 |
Target: 5'- gGACAUGU--UGgg-GCUggGGGAcAUGCa -3' miRNA: 3'- -UUGUACAaaACaaaCGAa-CCCU-UACG- -5' |
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33604 | 5' | -42.7 | NC_007605.1 | + | 23563 | 0.74 | 0.998264 |
Target: 5'- -cCAUGUcaUGUUUGCg-GGGAAUGUu -3' miRNA: 3'- uuGUACAaaACAAACGaaCCCUUACG- -5' |
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33604 | 5' | -42.7 | NC_007605.1 | + | 148099 | 1.12 | 0.039864 |
Target: 5'- aAACAUGUUUUGUUUGCUUGGGAAUGCu -3' miRNA: 3'- -UUGUACAAAACAAACGAACCCUUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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