miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 1826 0.66 0.980725
Target:  5'- -gGGCuUGGcuGGCGCGGCCgggGgcgcgACCg -3'
miRNA:   3'- uaCCGuACUu-CCGUGUCGGa--Caa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 1288 0.66 0.980725
Target:  5'- -gGGCuUGGcuGGCGCGGCCgggGgcgcgACCg -3'
miRNA:   3'- uaCCGuACUu-CCGUGUCGGa--Caa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 228 0.66 0.980725
Target:  5'- -gGGCuUGGcuGGCGCGGCCgggGgcgcgACCg -3'
miRNA:   3'- uaCCGuACUu-CCGUGUCGGa--Caa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 156185 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 111370 0.66 0.980725
Target:  5'- -cGGCcacccucaGAAGGCGCcuCCUGgUGCCg -3'
miRNA:   3'- uaCCGua------CUUCCGUGucGGACaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 143909 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 146978 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 150047 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 153116 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 11612 0.66 0.980725
Target:  5'- -gGGCGgcccagagGAGGGCGCGGUCccggGCCc -3'
miRNA:   3'- uaCCGUa-------CUUCCGUGUCGGacaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 159254 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 137771 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 140840 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 70061 0.66 0.980725
Target:  5'- uUGGCGUcaGGAGaCACGGCuCUGUcaguuaucaccgUACCa -3'
miRNA:   3'- uACCGUA--CUUCcGUGUCG-GACA------------AUGG- -5'
33605 5' -52.5 NC_007605.1 + 77827 0.66 0.980725
Target:  5'- uUGGCcUGuGGuaACAGCCUGgUUGCa -3'
miRNA:   3'- uACCGuACuUCcgUGUCGGAC-AAUGg -5'
33605 5' -52.5 NC_007605.1 + 122098 0.66 0.980725
Target:  5'- cUGGCcgguUGAAGGCuuccACGGCCcGcUGCUg -3'
miRNA:   3'- uACCGu---ACUUCCG----UGUCGGaCaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 162895 0.66 0.980725
Target:  5'- -gGGCAaGAAGGUugGGCgaGaaggagGCCg -3'
miRNA:   3'- uaCCGUaCUUCCGugUCGgaCaa----UGG- -5'
33605 5' -52.5 NC_007605.1 + 766 0.66 0.980725
Target:  5'- -gGGCuUGGcuGGCGCGGCCgggGgcgcgACCg -3'
miRNA:   3'- uaCCGuACUu-CCGUGUCGGa--Caa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 136327 0.66 0.980725
Target:  5'- -gGGCGagaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 139316 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.