miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 104589 0.66 0.97327
Target:  5'- cGUGGCuuccagaGAGGCGCAGCCca--GCCc -3'
miRNA:   3'- -UACCGuac----UUCCGUGUCGGacaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 142385 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 151592 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 111370 0.66 0.980725
Target:  5'- -cGGCcacccucaGAAGGCGCcuCCUGgUGCCg -3'
miRNA:   3'- uaCCGua------CUUCCGUGucGGACaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 32618 0.66 0.97327
Target:  5'- aGUGGCAcuGAGGCAagUAGCCUccgGUgacACCu -3'
miRNA:   3'- -UACCGUacUUCCGU--GUCGGA---CAa--UGG- -5'
33605 5' -52.5 NC_007605.1 + 28479 0.66 0.975955
Target:  5'- cUGGCAccAGGGUcCGGCCUGggAgCg -3'
miRNA:   3'- uACCGUacUUCCGuGUCGGACaaUgG- -5'
33605 5' -52.5 NC_007605.1 + 116756 0.66 0.978437
Target:  5'- -cGGCGagcgcGGAGGCGaaugaGGCCUGg-GCCa -3'
miRNA:   3'- uaCCGUa----CUUCCGUg----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 60252 0.66 0.970374
Target:  5'- -cGGCAccaGGAGGCGCcuucugaggguGGCCgUGUcgGCCg -3'
miRNA:   3'- uaCCGUa--CUUCCGUG-----------UCGG-ACAa-UGG- -5'
33605 5' -52.5 NC_007605.1 + 55740 0.66 0.97299
Target:  5'- -aGGCGggagagaUGggGGC---GCCUGggGCCg -3'
miRNA:   3'- uaCCGU-------ACuuCCGuguCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 148523 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 145454 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 131294 0.66 0.975955
Target:  5'- cUGGCAccAGGGUcCGGCCUGggAgCg -3'
miRNA:   3'- uACCGUacUUCCGuGUCGGACaaUgG- -5'
33605 5' -52.5 NC_007605.1 + 147244 0.66 0.975696
Target:  5'- cUGGUAaGggGGCugGugcggacGCCUGUguuuagucuaUGCCa -3'
miRNA:   3'- uACCGUaCuuCCGugU-------CGGACA----------AUGG- -5'
33605 5' -52.5 NC_007605.1 + 128380 0.66 0.975955
Target:  5'- -cGGCucuuGUGccaaGGGGCugAGCUUGgcACCa -3'
miRNA:   3'- uaCCG----UAC----UUCCGugUCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 70061 0.66 0.980725
Target:  5'- uUGGCGUcaGGAGaCACGGCuCUGUcaguuaucaccgUACCa -3'
miRNA:   3'- uACCGUA--CUUCcGUGUCG-GACA------------AUGG- -5'
33605 5' -52.5 NC_007605.1 + 77827 0.66 0.980725
Target:  5'- uUGGCcUGuGGuaACAGCCUGgUUGCa -3'
miRNA:   3'- uACCGuACuUCcgUGUCGGAC-AAUGg -5'
33605 5' -52.5 NC_007605.1 + 125679 0.66 0.970374
Target:  5'- -cGGaa-GAAGGCAUAGCCUacccACCa -3'
miRNA:   3'- uaCCguaCUUCCGUGUCGGAcaa-UGG- -5'
33605 5' -52.5 NC_007605.1 + 139316 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 122098 0.66 0.980725
Target:  5'- cUGGCcgguUGAAGGCuuccACGGCCcGcUGCUg -3'
miRNA:   3'- uACCGu---ACUUCCG----UGUCGGaCaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 162895 0.66 0.980725
Target:  5'- -gGGCAaGAAGGUugGGCgaGaaggagGCCg -3'
miRNA:   3'- uaCCGUaCUUCCGugUCGgaCaa----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.