miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 55740 0.66 0.97299
Target:  5'- -aGGCGggagagaUGggGGC---GCCUGggGCCg -3'
miRNA:   3'- uaCCGU-------ACuuCCGuguCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 159254 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 1826 0.66 0.980725
Target:  5'- -gGGCuUGGcuGGCGCGGCCgggGgcgcgACCg -3'
miRNA:   3'- uaCCGuACUu-CCGUGUCGGa--Caa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 140840 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 139316 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 157729 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 131294 0.66 0.975955
Target:  5'- cUGGCAccAGGGUcCGGCCUGggAgCg -3'
miRNA:   3'- uACCGUacUUCCGuGUCGGACaaUgG- -5'
33605 5' -52.5 NC_007605.1 + 146978 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 145454 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 32618 0.66 0.97327
Target:  5'- aGUGGCAcuGAGGCAagUAGCCUccgGUgacACCu -3'
miRNA:   3'- -UACCGUacUUCCGU--GUCGGA---CAa--UGG- -5'
33605 5' -52.5 NC_007605.1 + 148523 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 142385 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 60252 0.66 0.970374
Target:  5'- -cGGCAccaGGAGGCGCcuucugaggguGGCCgUGUcgGCCg -3'
miRNA:   3'- uaCCGUa--CUUCCGUG-----------UCGG-ACAa-UGG- -5'
33605 5' -52.5 NC_007605.1 + 143909 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 11612 0.66 0.980725
Target:  5'- -gGGCGgcccagagGAGGGCGCGGUCccggGCCc -3'
miRNA:   3'- uaCCGUa-------CUUCCGUGUCGGacaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 228 0.66 0.980725
Target:  5'- -gGGCuUGGcuGGCGCGGCCgggGgcgcgACCg -3'
miRNA:   3'- uaCCGuACUu-CCGUGUCGGa--Caa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 150934 0.67 0.956545
Target:  5'- -aGGCGUGAuccuGGGCGCAaUCU-UUGCCg -3'
miRNA:   3'- uaCCGUACU----UCCGUGUcGGAcAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 158062 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 4062 0.67 0.952497
Target:  5'- -gGGCGUGAAgcugaccuuuGGCuCGGCCUccUGCCc -3'
miRNA:   3'- uaCCGUACUU----------CCGuGUCGGAcaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 54778 0.67 0.952497
Target:  5'- cUGGCAgcagGGAGGC-CAGCagggUGUU-CCa -3'
miRNA:   3'- uACCGUa---CUUCCGuGUCGg---ACAAuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.