Results 101 - 104 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 89082 | 0.74 | 0.691946 |
Target: 5'- -gGGCcUGAGGGCAgGGCCU---GCCa -3' miRNA: 3'- uaCCGuACUUCCGUgUCGGAcaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 58881 | 0.76 | 0.565389 |
Target: 5'- -gGGCAUGAGGGCAucCAGCCgc--GCCc -3' miRNA: 3'- uaCCGUACUUCCGU--GUCGGacaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 78322 | 0.79 | 0.426907 |
Target: 5'- -gGGCAUGGAGGCAUAGCCacUGcgGCa -3' miRNA: 3'- uaCCGUACUUCCGUGUCGG--ACaaUGg -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 148221 | 1.11 | 0.004028 |
Target: 5'- aAUGGCAUGAAGGCACAGCCUGUUACCa -3' miRNA: 3'- -UACCGUACUUCCGUGUCGGACAAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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