Results 1 - 20 of 104 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 148221 | 1.11 | 0.004028 |
Target: 5'- aAUGGCAUGAAGGCACAGCCUGUUACCa -3' miRNA: 3'- -UACCGUACUUCCGUGUCGGACAAUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 78322 | 0.79 | 0.426907 |
Target: 5'- -gGGCAUGGAGGCAUAGCCacUGcgGCa -3' miRNA: 3'- uaCCGUACUUCCGUGUCGG--ACaaUGg -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 58881 | 0.76 | 0.565389 |
Target: 5'- -gGGCAUGAGGGCAucCAGCCgc--GCCc -3' miRNA: 3'- uaCCGUACUUCCGU--GUCGGacaaUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 89082 | 0.74 | 0.691946 |
Target: 5'- -gGGCcUGAGGGCAgGGCCU---GCCa -3' miRNA: 3'- uaCCGuACUUCCGUgUCGGAcaaUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 63613 | 0.73 | 0.70652 |
Target: 5'- gGUGGCGgugGAguaugcuucgucgggGGGCugGGCCUGcaGCCg -3' miRNA: 3'- -UACCGUa--CU---------------UCCGugUCGGACaaUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 150366 | 0.72 | 0.782606 |
Target: 5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3' miRNA: 3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 153435 | 0.72 | 0.782606 |
Target: 5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3' miRNA: 3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 138090 | 0.72 | 0.782606 |
Target: 5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3' miRNA: 3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 141159 | 0.72 | 0.782606 |
Target: 5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3' miRNA: 3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 144228 | 0.72 | 0.782606 |
Target: 5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3' miRNA: 3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 147297 | 0.72 | 0.782606 |
Target: 5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3' miRNA: 3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 159573 | 0.72 | 0.782606 |
Target: 5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3' miRNA: 3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 156504 | 0.72 | 0.782606 |
Target: 5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3' miRNA: 3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 35367 | 0.72 | 0.772977 |
Target: 5'- --aGCAUGguGGCugGGUCUGUggagGCCg -3' miRNA: 3'- uacCGUACuuCCGugUCGGACAa---UGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 86802 | 0.71 | 0.810584 |
Target: 5'- -cGGcCAUGGAGuuuguGCGCAGCUUGU-GCCg -3' miRNA: 3'- uaCC-GUACUUC-----CGUGUCGGACAaUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 90258 | 0.71 | 0.84542 |
Target: 5'- -gGGCGU--AGGUGgGGCCUGUgcUACCg -3' miRNA: 3'- uaCCGUAcuUCCGUgUCGGACA--AUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 106135 | 0.71 | 0.819576 |
Target: 5'- cUGaGCAUGggGGCAU-GUCUGUUcCCc -3' miRNA: 3'- uAC-CGUACuuCCGUGuCGGACAAuGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 86419 | 0.7 | 0.852818 |
Target: 5'- gGUGGCGUGGgaguGGGCGCcccccgaGGCCUc-UGCCg -3' miRNA: 3'- -UACCGUACU----UCCGUG-------UCGGAcaAUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 86359 | 0.7 | 0.852818 |
Target: 5'- gGUGGCGUGGgaguGGGCGCcccccgaGGCCUc-UGCCg -3' miRNA: 3'- -UACCGUACU----UCCGUG-------UCGGAcaAUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 89902 | 0.7 | 0.864761 |
Target: 5'- -gGGCAcaucugcuucaacaGGAGGCGCAGCCUGUc--- -3' miRNA: 3'- uaCCGUa-------------CUUCCGUGUCGGACAaugg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home