Results 61 - 80 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 112587 | 0.67 | 0.960351 |
Target: 5'- --cGCAUccuAGGCACGGCCUcGUgcaACCa -3' miRNA: 3'- uacCGUAcu-UCCGUGUCGGA-CAa--UGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 20980 | 0.67 | 0.960351 |
Target: 5'- -gGGCcgagGAGGGCugGGUCUGcgACg -3' miRNA: 3'- uaCCGua--CUUCCGugUCGGACaaUGg -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 117915 | 0.67 | 0.960351 |
Target: 5'- cUGGCcuuagcUGggGGCGCGgguGCCUGgcugaACCu -3' miRNA: 3'- uACCGu-----ACuuCCGUGU---CGGACaa---UGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 118029 | 0.67 | 0.956545 |
Target: 5'- gAUGGCAUGGAGgaGCugAGgUUGgcucugGCCa -3' miRNA: 3'- -UACCGUACUUC--CGugUCgGACaa----UGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 112737 | 0.67 | 0.956545 |
Target: 5'- cUGGaCGaGggGGCGCGGCUgGaUGCCc -3' miRNA: 3'- uACC-GUaCuuCCGUGUCGGaCaAUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 155355 | 0.67 | 0.96726 |
Target: 5'- -aGGCGgggGAuGGCGCGGCggcagCUGU-ACCa -3' miRNA: 3'- uaCCGUa--CUuCCGUGUCG-----GACAaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 169644 | 0.67 | 0.96726 |
Target: 5'- -gGGUcgGggGGCGCcGCCgGgcgcaGCCa -3' miRNA: 3'- uaCCGuaCuuCCGUGuCGGaCaa---UGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 151924 | 0.67 | 0.956545 |
Target: 5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3' miRNA: 3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 125679 | 0.66 | 0.970374 |
Target: 5'- -cGGaa-GAAGGCAUAGCCUacccACCa -3' miRNA: 3'- uaCCguaCUUCCGUGUCGGAcaa-UGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 32618 | 0.66 | 0.97327 |
Target: 5'- aGUGGCAcuGAGGCAagUAGCCUccgGUgacACCu -3' miRNA: 3'- -UACCGUacUUCCGU--GUCGGA---CAa--UGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 77827 | 0.66 | 0.980725 |
Target: 5'- uUGGCcUGuGGuaACAGCCUGgUUGCa -3' miRNA: 3'- uACCGuACuUCcgUGUCGGAC-AAUGg -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 70061 | 0.66 | 0.980725 |
Target: 5'- uUGGCGUcaGGAGaCACGGCuCUGUcaguuaucaccgUACCa -3' miRNA: 3'- uACCGUA--CUUCcGUGUCG-GACA------------AUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 128380 | 0.66 | 0.975955 |
Target: 5'- -cGGCucuuGUGccaaGGGGCugAGCUUGgcACCa -3' miRNA: 3'- uaCCG----UAC----UUCCGugUCGGACaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 147244 | 0.66 | 0.975696 |
Target: 5'- cUGGUAaGggGGCugGugcggacGCCUGUguuuagucuaUGCCa -3' miRNA: 3'- uACCGUaCuuCCGugU-------CGGACA----------AUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 104589 | 0.66 | 0.97327 |
Target: 5'- cGUGGCuuccagaGAGGCGCAGCCca--GCCc -3' miRNA: 3'- -UACCGuac----UUCCGUGUCGGacaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 65308 | 0.66 | 0.97327 |
Target: 5'- cUGGCgGUGcGGGCACAGCgg---GCCg -3' miRNA: 3'- uACCG-UACuUCCGUGUCGgacaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 55740 | 0.66 | 0.97299 |
Target: 5'- -aGGCGggagagaUGggGGC---GCCUGggGCCg -3' miRNA: 3'- uaCCGU-------ACuuCCGuguCGGACaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 111370 | 0.66 | 0.980725 |
Target: 5'- -cGGCcacccucaGAAGGCGCcuCCUGgUGCCg -3' miRNA: 3'- uaCCGua------CUUCCGUGucGGACaAUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 122098 | 0.66 | 0.980725 |
Target: 5'- cUGGCcgguUGAAGGCuuccACGGCCcGcUGCUg -3' miRNA: 3'- uACCGu---ACUUCCG----UGUCGGaCaAUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 162895 | 0.66 | 0.980725 |
Target: 5'- -gGGCAaGAAGGUugGGCgaGaaggagGCCg -3' miRNA: 3'- uaCCGUaCUUCCGugUCGgaCaa----UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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