miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 148221 1.11 0.004028
Target:  5'- aAUGGCAUGAAGGCACAGCCUGUUACCa -3'
miRNA:   3'- -UACCGUACUUCCGUGUCGGACAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 78322 0.79 0.426907
Target:  5'- -gGGCAUGGAGGCAUAGCCacUGcgGCa -3'
miRNA:   3'- uaCCGUACUUCCGUGUCGG--ACaaUGg -5'
33605 5' -52.5 NC_007605.1 + 58881 0.76 0.565389
Target:  5'- -gGGCAUGAGGGCAucCAGCCgc--GCCc -3'
miRNA:   3'- uaCCGUACUUCCGU--GUCGGacaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 89082 0.74 0.691946
Target:  5'- -gGGCcUGAGGGCAgGGCCU---GCCa -3'
miRNA:   3'- uaCCGuACUUCCGUgUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 63613 0.73 0.70652
Target:  5'- gGUGGCGgugGAguaugcuucgucgggGGGCugGGCCUGcaGCCg -3'
miRNA:   3'- -UACCGUa--CU---------------UCCGugUCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 35367 0.72 0.772977
Target:  5'- --aGCAUGguGGCugGGUCUGUggagGCCg -3'
miRNA:   3'- uacCGUACuuCCGugUCGGACAa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 153435 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 147297 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 144228 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 141159 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 138090 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 150366 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 156504 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 159573 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 86802 0.71 0.810584
Target:  5'- -cGGcCAUGGAGuuuguGCGCAGCUUGU-GCCg -3'
miRNA:   3'- uaCC-GUACUUC-----CGUGUCGGACAaUGG- -5'
33605 5' -52.5 NC_007605.1 + 106135 0.71 0.819576
Target:  5'- cUGaGCAUGggGGCAU-GUCUGUUcCCc -3'
miRNA:   3'- uAC-CGUACuuCCGUGuCGGACAAuGG- -5'
33605 5' -52.5 NC_007605.1 + 90258 0.71 0.84542
Target:  5'- -gGGCGU--AGGUGgGGCCUGUgcUACCg -3'
miRNA:   3'- uaCCGUAcuUCCGUgUCGGACA--AUGG- -5'
33605 5' -52.5 NC_007605.1 + 86359 0.7 0.852818
Target:  5'- gGUGGCGUGGgaguGGGCGCcccccgaGGCCUc-UGCCg -3'
miRNA:   3'- -UACCGUACU----UCCGUG-------UCGGAcaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 86419 0.7 0.852818
Target:  5'- gGUGGCGUGGgaguGGGCGCcccccgaGGCCUc-UGCCg -3'
miRNA:   3'- -UACCGUACU----UCCGUG-------UCGGAcaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 89902 0.7 0.864761
Target:  5'- -gGGCAcaucugcuucaacaGGAGGCGCAGCCUGUc--- -3'
miRNA:   3'- uaCCGUa-------------CUUCCGUGUCGGACAaugg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.