miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 36529 0.7 0.876942
Target:  5'- cUGuGCAUGuguguGGGCGCAGCUUGgacUGCg -3'
miRNA:   3'- uAC-CGUACu----UCCGUGUCGGACa--AUGg -5'
33605 5' -52.5 NC_007605.1 + 69111 0.7 0.884252
Target:  5'- gAUGGCcgGggGGaagagcacauGCAGCCUGaUGCg -3'
miRNA:   3'- -UACCGuaCuuCCg---------UGUCGGACaAUGg -5'
33605 5' -52.5 NC_007605.1 + 20902 0.69 0.891322
Target:  5'- cGUGGUcgGcuGGCACcaGGCCUG--GCCa -3'
miRNA:   3'- -UACCGuaCuuCCGUG--UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 61289 0.69 0.891322
Target:  5'- uGUGGCcccGUGggGGCGCAgacggcccuucGCCUGgaucUGCa -3'
miRNA:   3'- -UACCG---UACuuCCGUGU-----------CGGACa---AUGg -5'
33605 5' -52.5 NC_007605.1 + 48466 0.69 0.898149
Target:  5'- -gGGCcgGggGGCcCuGCCUGa-GCCg -3'
miRNA:   3'- uaCCGuaCuuCCGuGuCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 122512 0.69 0.898149
Target:  5'- gGUGGC-UGAAGGC-UGGCCcGUUguagGCCa -3'
miRNA:   3'- -UACCGuACUUCCGuGUCGGaCAA----UGG- -5'
33605 5' -52.5 NC_007605.1 + 36826 0.69 0.898149
Target:  5'- cAUGGCGgccuGGCACGGCCU--UACUc -3'
miRNA:   3'- -UACCGUacuuCCGUGUCGGAcaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 43742 0.69 0.898149
Target:  5'- gGUGGCAUcGAAGGU--GGCUUGggGCUc -3'
miRNA:   3'- -UACCGUA-CUUCCGugUCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 123943 0.69 0.902126
Target:  5'- cUGGCGUaGAGGcCACAGCCgccucagaagcugGggGCCu -3'
miRNA:   3'- uACCGUAcUUCC-GUGUCGGa------------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 48342 0.69 0.904727
Target:  5'- -aGGCccGggGGCAgCAGUUUGagACCg -3'
miRNA:   3'- uaCCGuaCuuCCGU-GUCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 50409 0.69 0.911054
Target:  5'- cGUGGCcuuu-GGCACgGGCCUGgcACCc -3'
miRNA:   3'- -UACCGuacuuCCGUG-UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 137029 0.69 0.911054
Target:  5'- -aGGCAgcucAGGCGCAGCCUcc-ACCc -3'
miRNA:   3'- uaCCGUacu-UCCGUGUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 44718 0.69 0.917128
Target:  5'- -aGGCGcaggagGGAGGCGCAGUCUagcagGCCu -3'
miRNA:   3'- uaCCGUa-----CUUCCGUGUCGGAcaa--UGG- -5'
33605 5' -52.5 NC_007605.1 + 95408 0.68 0.922376
Target:  5'- gGUGGCGgcgagGAAgagcaguGGCACAGCCU-UUGCa -3'
miRNA:   3'- -UACCGUa----CUU-------CCGUGUCGGAcAAUGg -5'
33605 5' -52.5 NC_007605.1 + 148981 0.68 0.928509
Target:  5'- cUGGCAgcgUGAGcGCGCAGCCc--UGCCg -3'
miRNA:   3'- uACCGU---ACUUcCGUGUCGGacaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 151672 0.68 0.928509
Target:  5'- -gGGCGggaGggGGCugGGCCUc--ACCu -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 118178 0.68 0.933296
Target:  5'- uGUGGCAuuggacgucccuuUGGAGG-ACAGCgUGgggGCCa -3'
miRNA:   3'- -UACCGU-------------ACUUCCgUGUCGgACaa-UGG- -5'
33605 5' -52.5 NC_007605.1 + 98708 0.68 0.933296
Target:  5'- -cGGCGUGAGGuacugcgccucauGCGCcGCCUGgguCCa -3'
miRNA:   3'- uaCCGUACUUC-------------CGUGuCGGACaauGG- -5'
33605 5' -52.5 NC_007605.1 + 105760 0.68 0.933815
Target:  5'- uUGGCAUagaagggguaGAAGGCguccgACAGCCcGUcACCu -3'
miRNA:   3'- uACCGUA----------CUUCCG-----UGUCGGaCAaUGG- -5'
33605 5' -52.5 NC_007605.1 + 104718 0.68 0.938865
Target:  5'- gGUGGuCGUGGgauGGCGgGGCCUuGUcUGCCu -3'
miRNA:   3'- -UACC-GUACUu--CCGUgUCGGA-CA-AUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.