Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 88995 | 0.68 | 0.938865 |
Target: 5'- -gGGUccGAGGGCGgGGCCU---GCCa -3' miRNA: 3'- uaCCGuaCUUCCGUgUCGGAcaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 139396 | 0.68 | 0.94366 |
Target: 5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3' miRNA: 3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 142465 | 0.68 | 0.94366 |
Target: 5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3' miRNA: 3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 145534 | 0.68 | 0.94366 |
Target: 5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3' miRNA: 3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 154740 | 0.68 | 0.94366 |
Target: 5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3' miRNA: 3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 157809 | 0.68 | 0.94366 |
Target: 5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3' miRNA: 3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 148603 | 0.68 | 0.94366 |
Target: 5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3' miRNA: 3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 34597 | 0.68 | 0.948204 |
Target: 5'- -gGGgGUGGAGGCugcGCCUGagcUGCCu -3' miRNA: 3'- uaCCgUACUUCCGuguCGGACa--AUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 54778 | 0.67 | 0.952497 |
Target: 5'- cUGGCAgcagGGAGGC-CAGCagggUGUU-CCa -3' miRNA: 3'- uACCGUa---CUUCCGuGUCGg---ACAAuGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 4062 | 0.67 | 0.952497 |
Target: 5'- -gGGCGUGAAgcugaccuuuGGCuCGGCCUccUGCCc -3' miRNA: 3'- uaCCGUACUU----------CCGuGUCGGAcaAUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 142717 | 0.67 | 0.956545 |
Target: 5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3' miRNA: 3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 148855 | 0.67 | 0.956545 |
Target: 5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3' miRNA: 3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 139649 | 0.67 | 0.956545 |
Target: 5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3' miRNA: 3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 145786 | 0.67 | 0.956545 |
Target: 5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3' miRNA: 3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 151924 | 0.67 | 0.956545 |
Target: 5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3' miRNA: 3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 154993 | 0.67 | 0.956545 |
Target: 5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3' miRNA: 3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 158062 | 0.67 | 0.956545 |
Target: 5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3' miRNA: 3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 76432 | 0.67 | 0.956545 |
Target: 5'- -gGGCAacgGAagaaaagcuGGGUGCGGCCUGUgaggauCCa -3' miRNA: 3'- uaCCGUa--CU---------UCCGUGUCGGACAau----GG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 150934 | 0.67 | 0.956545 |
Target: 5'- -aGGCGUGAuccuGGGCGCAaUCU-UUGCCg -3' miRNA: 3'- uaCCGUACU----UCCGUGUcGGAcAAUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 136580 | 0.67 | 0.956545 |
Target: 5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3' miRNA: 3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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