miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 117915 0.67 0.960351
Target:  5'- cUGGCcuuagcUGggGGCGCGgguGCCUGgcugaACCu -3'
miRNA:   3'- uACCGu-----ACuuCCGUGU---CGGACaa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 112587 0.67 0.960351
Target:  5'- --cGCAUccuAGGCACGGCCUcGUgcaACCa -3'
miRNA:   3'- uacCGUAcu-UCCGUGUCGGA-CAa--UGG- -5'
33605 5' -52.5 NC_007605.1 + 150934 0.67 0.956545
Target:  5'- -aGGCGUGAuccuGGGCGCAaUCU-UUGCCg -3'
miRNA:   3'- uaCCGUACU----UCCGUGUcGGAcAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 118029 0.67 0.956545
Target:  5'- gAUGGCAUGGAGgaGCugAGgUUGgcucugGCCa -3'
miRNA:   3'- -UACCGUACUUC--CGugUCgGACaa----UGG- -5'
33605 5' -52.5 NC_007605.1 + 139649 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 136580 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 142717 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 145786 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 148855 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 151924 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 154993 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 158062 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 76432 0.67 0.956545
Target:  5'- -gGGCAacgGAagaaaagcuGGGUGCGGCCUGUgaggauCCa -3'
miRNA:   3'- uaCCGUa--CU---------UCCGUGUCGGACAau----GG- -5'
33605 5' -52.5 NC_007605.1 + 112737 0.67 0.956545
Target:  5'- cUGGaCGaGggGGCGCGGCUgGaUGCCc -3'
miRNA:   3'- uACC-GUaCuuCCGUGUCGGaCaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 54778 0.67 0.952497
Target:  5'- cUGGCAgcagGGAGGC-CAGCagggUGUU-CCa -3'
miRNA:   3'- uACCGUa---CUUCCGuGUCGg---ACAAuGG- -5'
33605 5' -52.5 NC_007605.1 + 4062 0.67 0.952497
Target:  5'- -gGGCGUGAAgcugaccuuuGGCuCGGCCUccUGCCc -3'
miRNA:   3'- uaCCGUACUU----------CCGuGUCGGAcaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 34597 0.68 0.948204
Target:  5'- -gGGgGUGGAGGCugcGCCUGagcUGCCu -3'
miRNA:   3'- uaCCgUACUUCCGuguCGGACa--AUGG- -5'
33605 5' -52.5 NC_007605.1 + 154740 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 142465 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 145534 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.