miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 228 0.66 0.980725
Target:  5'- -gGGCuUGGcuGGCGCGGCCgggGgcgcgACCg -3'
miRNA:   3'- uaCCGuACUu-CCGUGUCGGa--Caa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 766 0.66 0.980725
Target:  5'- -gGGCuUGGcuGGCGCGGCCgggGgcgcgACCg -3'
miRNA:   3'- uaCCGuACUu-CCGUGUCGGa--Caa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 1288 0.66 0.980725
Target:  5'- -gGGCuUGGcuGGCGCGGCCgggGgcgcgACCg -3'
miRNA:   3'- uaCCGuACUu-CCGUGUCGGa--Caa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 1826 0.66 0.980725
Target:  5'- -gGGCuUGGcuGGCGCGGCCgggGgcgcgACCg -3'
miRNA:   3'- uaCCGuACUu-CCGUGUCGGa--Caa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 4062 0.67 0.952497
Target:  5'- -gGGCGUGAAgcugaccuuuGGCuCGGCCUccUGCCc -3'
miRNA:   3'- uaCCGUACUU----------CCGuGUCGGAcaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 11612 0.66 0.980725
Target:  5'- -gGGCGgcccagagGAGGGCGCGGUCccggGCCc -3'
miRNA:   3'- uaCCGUa-------CUUCCGUGUCGGacaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 20902 0.69 0.891322
Target:  5'- cGUGGUcgGcuGGCACcaGGCCUG--GCCa -3'
miRNA:   3'- -UACCGuaCuuCCGUG--UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 20980 0.67 0.960351
Target:  5'- -gGGCcgagGAGGGCugGGUCUGcgACg -3'
miRNA:   3'- uaCCGua--CUUCCGugUCGGACaaUGg -5'
33605 5' -52.5 NC_007605.1 + 28479 0.66 0.975955
Target:  5'- cUGGCAccAGGGUcCGGCCUGggAgCg -3'
miRNA:   3'- uACCGUacUUCCGuGUCGGACaaUgG- -5'
33605 5' -52.5 NC_007605.1 + 32618 0.66 0.97327
Target:  5'- aGUGGCAcuGAGGCAagUAGCCUccgGUgacACCu -3'
miRNA:   3'- -UACCGUacUUCCGU--GUCGGA---CAa--UGG- -5'
33605 5' -52.5 NC_007605.1 + 34597 0.68 0.948204
Target:  5'- -gGGgGUGGAGGCugcGCCUGagcUGCCu -3'
miRNA:   3'- uaCCgUACUUCCGuguCGGACa--AUGG- -5'
33605 5' -52.5 NC_007605.1 + 35367 0.72 0.772977
Target:  5'- --aGCAUGguGGCugGGUCUGUggagGCCg -3'
miRNA:   3'- uacCGUACuuCCGugUCGGACAa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 36529 0.7 0.876942
Target:  5'- cUGuGCAUGuguguGGGCGCAGCUUGgacUGCg -3'
miRNA:   3'- uAC-CGUACu----UCCGUGUCGGACa--AUGg -5'
33605 5' -52.5 NC_007605.1 + 36826 0.69 0.898149
Target:  5'- cAUGGCGgccuGGCACGGCCU--UACUc -3'
miRNA:   3'- -UACCGUacuuCCGUGUCGGAcaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 43742 0.69 0.898149
Target:  5'- gGUGGCAUcGAAGGU--GGCUUGggGCUc -3'
miRNA:   3'- -UACCGUA-CUUCCGugUCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 44718 0.69 0.917128
Target:  5'- -aGGCGcaggagGGAGGCGCAGUCUagcagGCCu -3'
miRNA:   3'- uaCCGUa-----CUUCCGUGUCGGAcaa--UGG- -5'
33605 5' -52.5 NC_007605.1 + 48342 0.69 0.904727
Target:  5'- -aGGCccGggGGCAgCAGUUUGagACCg -3'
miRNA:   3'- uaCCGuaCuuCCGU-GUCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 48466 0.69 0.898149
Target:  5'- -gGGCcgGggGGCcCuGCCUGa-GCCg -3'
miRNA:   3'- uaCCGuaCuuCCGuGuCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 50409 0.69 0.911054
Target:  5'- cGUGGCcuuu-GGCACgGGCCUGgcACCc -3'
miRNA:   3'- -UACCGuacuuCCGUG-UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 54778 0.67 0.952497
Target:  5'- cUGGCAgcagGGAGGC-CAGCagggUGUU-CCa -3'
miRNA:   3'- uACCGUa---CUUCCGuGUCGg---ACAAuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.