miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 55740 0.66 0.97299
Target:  5'- -aGGCGggagagaUGggGGC---GCCUGggGCCg -3'
miRNA:   3'- uaCCGU-------ACuuCCGuguCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 58881 0.76 0.565389
Target:  5'- -gGGCAUGAGGGCAucCAGCCgc--GCCc -3'
miRNA:   3'- uaCCGUACUUCCGU--GUCGGacaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 60252 0.66 0.970374
Target:  5'- -cGGCAccaGGAGGCGCcuucugaggguGGCCgUGUcgGCCg -3'
miRNA:   3'- uaCCGUa--CUUCCGUG-----------UCGG-ACAa-UGG- -5'
33605 5' -52.5 NC_007605.1 + 61289 0.69 0.891322
Target:  5'- uGUGGCcccGUGggGGCGCAgacggcccuucGCCUGgaucUGCa -3'
miRNA:   3'- -UACCG---UACuuCCGUGU-----------CGGACa---AUGg -5'
33605 5' -52.5 NC_007605.1 + 63613 0.73 0.70652
Target:  5'- gGUGGCGgugGAguaugcuucgucgggGGGCugGGCCUGcaGCCg -3'
miRNA:   3'- -UACCGUa--CU---------------UCCGugUCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 65308 0.66 0.97327
Target:  5'- cUGGCgGUGcGGGCACAGCgg---GCCg -3'
miRNA:   3'- uACCG-UACuUCCGUGUCGgacaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 69111 0.7 0.884252
Target:  5'- gAUGGCcgGggGGaagagcacauGCAGCCUGaUGCg -3'
miRNA:   3'- -UACCGuaCuuCCg---------UGUCGGACaAUGg -5'
33605 5' -52.5 NC_007605.1 + 70061 0.66 0.980725
Target:  5'- uUGGCGUcaGGAGaCACGGCuCUGUcaguuaucaccgUACCa -3'
miRNA:   3'- uACCGUA--CUUCcGUGUCG-GACA------------AUGG- -5'
33605 5' -52.5 NC_007605.1 + 76432 0.67 0.956545
Target:  5'- -gGGCAacgGAagaaaagcuGGGUGCGGCCUGUgaggauCCa -3'
miRNA:   3'- uaCCGUa--CU---------UCCGUGUCGGACAau----GG- -5'
33605 5' -52.5 NC_007605.1 + 77827 0.66 0.980725
Target:  5'- uUGGCcUGuGGuaACAGCCUGgUUGCa -3'
miRNA:   3'- uACCGuACuUCcgUGUCGGAC-AAUGg -5'
33605 5' -52.5 NC_007605.1 + 78322 0.79 0.426907
Target:  5'- -gGGCAUGGAGGCAUAGCCacUGcgGCa -3'
miRNA:   3'- uaCCGUACUUCCGUGUCGG--ACaaUGg -5'
33605 5' -52.5 NC_007605.1 + 86359 0.7 0.852818
Target:  5'- gGUGGCGUGGgaguGGGCGCcccccgaGGCCUc-UGCCg -3'
miRNA:   3'- -UACCGUACU----UCCGUG-------UCGGAcaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 86419 0.7 0.852818
Target:  5'- gGUGGCGUGGgaguGGGCGCcccccgaGGCCUc-UGCCg -3'
miRNA:   3'- -UACCGUACU----UCCGUG-------UCGGAcaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 86802 0.71 0.810584
Target:  5'- -cGGcCAUGGAGuuuguGCGCAGCUUGU-GCCg -3'
miRNA:   3'- uaCC-GUACUUC-----CGUGUCGGACAaUGG- -5'
33605 5' -52.5 NC_007605.1 + 88995 0.68 0.938865
Target:  5'- -gGGUccGAGGGCGgGGCCU---GCCa -3'
miRNA:   3'- uaCCGuaCUUCCGUgUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 89082 0.74 0.691946
Target:  5'- -gGGCcUGAGGGCAgGGCCU---GCCa -3'
miRNA:   3'- uaCCGuACUUCCGUgUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 89902 0.7 0.864761
Target:  5'- -gGGCAcaucugcuucaacaGGAGGCGCAGCCUGUc--- -3'
miRNA:   3'- uaCCGUa-------------CUUCCGUGUCGGACAaugg -5'
33605 5' -52.5 NC_007605.1 + 90258 0.71 0.84542
Target:  5'- -gGGCGU--AGGUGgGGCCUGUgcUACCg -3'
miRNA:   3'- uaCCGUAcuUCCGUgUCGGACA--AUGG- -5'
33605 5' -52.5 NC_007605.1 + 95408 0.68 0.922376
Target:  5'- gGUGGCGgcgagGAAgagcaguGGCACAGCCU-UUGCa -3'
miRNA:   3'- -UACCGUa----CUU-------CCGUGUCGGAcAAUGg -5'
33605 5' -52.5 NC_007605.1 + 98708 0.68 0.933296
Target:  5'- -cGGCGUGAGGuacugcgccucauGCGCcGCCUGgguCCa -3'
miRNA:   3'- uaCCGUACUUC-------------CGUGuCGGACaauGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.