miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 104589 0.66 0.97327
Target:  5'- cGUGGCuuccagaGAGGCGCAGCCca--GCCc -3'
miRNA:   3'- -UACCGuac----UUCCGUGUCGGacaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 104718 0.68 0.938865
Target:  5'- gGUGGuCGUGGgauGGCGgGGCCUuGUcUGCCu -3'
miRNA:   3'- -UACC-GUACUu--CCGUgUCGGA-CA-AUGG- -5'
33605 5' -52.5 NC_007605.1 + 105760 0.68 0.933815
Target:  5'- uUGGCAUagaagggguaGAAGGCguccgACAGCCcGUcACCu -3'
miRNA:   3'- uACCGUA----------CUUCCG-----UGUCGGaCAaUGG- -5'
33605 5' -52.5 NC_007605.1 + 106135 0.71 0.819576
Target:  5'- cUGaGCAUGggGGCAU-GUCUGUUcCCc -3'
miRNA:   3'- uAC-CGUACuuCCGUGuCGGACAAuGG- -5'
33605 5' -52.5 NC_007605.1 + 111370 0.66 0.980725
Target:  5'- -cGGCcacccucaGAAGGCGCcuCCUGgUGCCg -3'
miRNA:   3'- uaCCGua------CUUCCGUGucGGACaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 112587 0.67 0.960351
Target:  5'- --cGCAUccuAGGCACGGCCUcGUgcaACCa -3'
miRNA:   3'- uacCGUAcu-UCCGUGUCGGA-CAa--UGG- -5'
33605 5' -52.5 NC_007605.1 + 112737 0.67 0.956545
Target:  5'- cUGGaCGaGggGGCGCGGCUgGaUGCCc -3'
miRNA:   3'- uACC-GUaCuuCCGUGUCGGaCaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 116756 0.66 0.978437
Target:  5'- -cGGCGagcgcGGAGGCGaaugaGGCCUGg-GCCa -3'
miRNA:   3'- uaCCGUa----CUUCCGUg----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 117915 0.67 0.960351
Target:  5'- cUGGCcuuagcUGggGGCGCGgguGCCUGgcugaACCu -3'
miRNA:   3'- uACCGu-----ACuuCCGUGU---CGGACaa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 118029 0.67 0.956545
Target:  5'- gAUGGCAUGGAGgaGCugAGgUUGgcucugGCCa -3'
miRNA:   3'- -UACCGUACUUC--CGugUCgGACaa----UGG- -5'
33605 5' -52.5 NC_007605.1 + 118178 0.68 0.933296
Target:  5'- uGUGGCAuuggacgucccuuUGGAGG-ACAGCgUGgggGCCa -3'
miRNA:   3'- -UACCGU-------------ACUUCCgUGUCGgACaa-UGG- -5'
33605 5' -52.5 NC_007605.1 + 119433 0.67 0.963921
Target:  5'- --aGCGUGGAGGCuCAGCUaggGUcucUGCCu -3'
miRNA:   3'- uacCGUACUUCCGuGUCGGa--CA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 122098 0.66 0.980725
Target:  5'- cUGGCcgguUGAAGGCuuccACGGCCcGcUGCUg -3'
miRNA:   3'- uACCGu---ACUUCCG----UGUCGGaCaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 122512 0.69 0.898149
Target:  5'- gGUGGC-UGAAGGC-UGGCCcGUUguagGCCa -3'
miRNA:   3'- -UACCGuACUUCCGuGUCGGaCAA----UGG- -5'
33605 5' -52.5 NC_007605.1 + 123943 0.69 0.902126
Target:  5'- cUGGCGUaGAGGcCACAGCCgccucagaagcugGggGCCu -3'
miRNA:   3'- uACCGUAcUUCC-GUGUCGGa------------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 125679 0.66 0.970374
Target:  5'- -cGGaa-GAAGGCAUAGCCUacccACCa -3'
miRNA:   3'- uaCCguaCUUCCGUGUCGGAcaa-UGG- -5'
33605 5' -52.5 NC_007605.1 + 128380 0.66 0.975955
Target:  5'- -cGGCucuuGUGccaaGGGGCugAGCUUGgcACCa -3'
miRNA:   3'- uaCCG----UAC----UUCCGugUCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 131294 0.66 0.975955
Target:  5'- cUGGCAccAGGGUcCGGCCUGggAgCg -3'
miRNA:   3'- uACCGUacUUCCGuGUCGGACaaUgG- -5'
33605 5' -52.5 NC_007605.1 + 136327 0.66 0.980725
Target:  5'- -gGGCGagaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 136580 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.