miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 137029 0.69 0.911054
Target:  5'- -aGGCAgcucAGGCGCAGCCUcc-ACCc -3'
miRNA:   3'- uaCCGUacu-UCCGUGUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 137771 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 138090 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 139316 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 139396 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 139649 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 140840 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 141159 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 142385 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 142465 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 142717 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 143909 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 144228 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 145454 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 145534 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 145786 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 146978 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 147244 0.66 0.975696
Target:  5'- cUGGUAaGggGGCugGugcggacGCCUGUguuuagucuaUGCCa -3'
miRNA:   3'- uACCGUaCuuCCGugU-------CGGACA----------AUGG- -5'
33605 5' -52.5 NC_007605.1 + 147297 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 148221 1.11 0.004028
Target:  5'- aAUGGCAUGAAGGCACAGCCUGUUACCa -3'
miRNA:   3'- -UACCGUACUUCCGUGUCGGACAAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.