miRNA display CGI


Results 81 - 100 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 148523 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 148603 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 148855 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 148981 0.68 0.928509
Target:  5'- cUGGCAgcgUGAGcGCGCAGCCc--UGCCg -3'
miRNA:   3'- uACCGU---ACUUcCGUGUCGGacaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 150047 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 150366 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 150934 0.67 0.956545
Target:  5'- -aGGCGUGAuccuGGGCGCAaUCU-UUGCCg -3'
miRNA:   3'- uaCCGUACU----UCCGUGUcGGAcAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 151592 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 151672 0.68 0.928509
Target:  5'- -gGGCGggaGggGGCugGGCCUc--ACCu -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 151924 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 153116 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 153435 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 154740 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 154993 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 155355 0.67 0.96726
Target:  5'- -aGGCGgggGAuGGCGCGGCggcagCUGU-ACCa -3'
miRNA:   3'- uaCCGUa--CUuCCGUGUCG-----GACAaUGG- -5'
33605 5' -52.5 NC_007605.1 + 156185 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 156504 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 157729 0.66 0.980505
Target:  5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3'
miRNA:   3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 157809 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 158062 0.67 0.956545
Target:  5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3'
miRNA:   3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.