miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 48466 0.69 0.898149
Target:  5'- -gGGCcgGggGGCcCuGCCUGa-GCCg -3'
miRNA:   3'- uaCCGuaCuuCCGuGuCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 122512 0.69 0.898149
Target:  5'- gGUGGC-UGAAGGC-UGGCCcGUUguagGCCa -3'
miRNA:   3'- -UACCGuACUUCCGuGUCGGaCAA----UGG- -5'
33605 5' -52.5 NC_007605.1 + 137029 0.69 0.911054
Target:  5'- -aGGCAgcucAGGCGCAGCCUcc-ACCc -3'
miRNA:   3'- uaCCGUacu-UCCGUGUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 50409 0.69 0.911054
Target:  5'- cGUGGCcuuu-GGCACgGGCCUGgcACCc -3'
miRNA:   3'- -UACCGuacuuCCGUG-UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 148981 0.68 0.928509
Target:  5'- cUGGCAgcgUGAGcGCGCAGCCc--UGCCg -3'
miRNA:   3'- uACCGU---ACUUcCGUGUCGGacaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 118178 0.68 0.933296
Target:  5'- uGUGGCAuuggacgucccuuUGGAGG-ACAGCgUGgggGCCa -3'
miRNA:   3'- -UACCGU-------------ACUUCCgUGUCGgACaa-UGG- -5'
33605 5' -52.5 NC_007605.1 + 104718 0.68 0.938865
Target:  5'- gGUGGuCGUGGgauGGCGgGGCCUuGUcUGCCu -3'
miRNA:   3'- -UACC-GUACUu--CCGUgUCGGA-CA-AUGG- -5'
33605 5' -52.5 NC_007605.1 + 54778 0.67 0.952497
Target:  5'- cUGGCAgcagGGAGGC-CAGCagggUGUU-CCa -3'
miRNA:   3'- uACCGUa---CUUCCGuGUCGg---ACAAuGG- -5'
33605 5' -52.5 NC_007605.1 + 150366 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 153435 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 156504 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 159573 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 86802 0.71 0.810584
Target:  5'- -cGGcCAUGGAGuuuguGCGCAGCUUGU-GCCg -3'
miRNA:   3'- uaCC-GUACUUC-----CGUGUCGGACAaUGG- -5'
33605 5' -52.5 NC_007605.1 + 147297 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 144228 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 141159 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 138090 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 35367 0.72 0.772977
Target:  5'- --aGCAUGguGGCugGGUCUGUggagGCCg -3'
miRNA:   3'- uacCGUACuuCCGugUCGGACAa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 89082 0.74 0.691946
Target:  5'- -gGGCcUGAGGGCAgGGCCU---GCCa -3'
miRNA:   3'- uaCCGuACUUCCGUgUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 111370 0.66 0.980725
Target:  5'- -cGGCcacccucaGAAGGCGCcuCCUGgUGCCg -3'
miRNA:   3'- uaCCGua------CUUCCGUGucGGACaAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.