miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 150366 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 147297 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 144228 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 141159 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 138090 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 35367 0.72 0.772977
Target:  5'- --aGCAUGguGGCugGGUCUGUggagGCCg -3'
miRNA:   3'- uacCGUACuuCCGugUCGGACAa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 89082 0.74 0.691946
Target:  5'- -gGGCcUGAGGGCAgGGCCU---GCCa -3'
miRNA:   3'- uaCCGuACUUCCGUgUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 90258 0.71 0.84542
Target:  5'- -gGGCGU--AGGUGgGGCCUGUgcUACCg -3'
miRNA:   3'- uaCCGUAcuUCCGUgUCGGACA--AUGG- -5'
33605 5' -52.5 NC_007605.1 + 86359 0.7 0.852818
Target:  5'- gGUGGCGUGGgaguGGGCGCcccccgaGGCCUc-UGCCg -3'
miRNA:   3'- -UACCGUACU----UCCGUG-------UCGGAcaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 95408 0.68 0.922376
Target:  5'- gGUGGCGgcgagGAAgagcaguGGCACAGCCU-UUGCa -3'
miRNA:   3'- -UACCGUa----CUU-------CCGUGUCGGAcAAUGg -5'
33605 5' -52.5 NC_007605.1 + 44718 0.69 0.917128
Target:  5'- -aGGCGcaggagGGAGGCGCAGUCUagcagGCCu -3'
miRNA:   3'- uaCCGUa-----CUUCCGUGUCGGAcaa--UGG- -5'
33605 5' -52.5 NC_007605.1 + 48342 0.69 0.904727
Target:  5'- -aGGCccGggGGCAgCAGUUUGagACCg -3'
miRNA:   3'- uaCCGuaCuuCCGU-GUCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 123943 0.69 0.902126
Target:  5'- cUGGCGUaGAGGcCACAGCCgccucagaagcugGggGCCu -3'
miRNA:   3'- uACCGUAcUUCC-GUGUCGGa------------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 36826 0.69 0.898149
Target:  5'- cAUGGCGgccuGGCACGGCCU--UACUc -3'
miRNA:   3'- -UACCGUacuuCCGUGUCGGAcaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 43742 0.69 0.898149
Target:  5'- gGUGGCAUcGAAGGU--GGCUUGggGCUc -3'
miRNA:   3'- -UACCGUA-CUUCCGugUCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 20902 0.69 0.891322
Target:  5'- cGUGGUcgGcuGGCACcaGGCCUG--GCCa -3'
miRNA:   3'- -UACCGuaCuuCCGUG--UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 61289 0.69 0.891322
Target:  5'- uGUGGCcccGUGggGGCGCAgacggcccuucGCCUGgaucUGCa -3'
miRNA:   3'- -UACCG---UACuuCCGUGU-----------CGGACa---AUGg -5'
33605 5' -52.5 NC_007605.1 + 69111 0.7 0.884252
Target:  5'- gAUGGCcgGggGGaagagcacauGCAGCCUGaUGCg -3'
miRNA:   3'- -UACCGuaCuuCCg---------UGUCGGACaAUGg -5'
33605 5' -52.5 NC_007605.1 + 36529 0.7 0.876942
Target:  5'- cUGuGCAUGuguguGGGCGCAGCUUGgacUGCg -3'
miRNA:   3'- uAC-CGUACu----UCCGUGUCGGACa--AUGg -5'
33605 5' -52.5 NC_007605.1 + 86419 0.7 0.852818
Target:  5'- gGUGGCGUGGgaguGGGCGCcccccgaGGCCUc-UGCCg -3'
miRNA:   3'- -UACCGUACU----UCCGUG-------UCGGAcaAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.