miRNA display CGI


Results 81 - 100 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 35367 0.72 0.772977
Target:  5'- --aGCAUGguGGCugGGUCUGUggagGCCg -3'
miRNA:   3'- uacCGUACuuCCGugUCGGACAa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 89082 0.74 0.691946
Target:  5'- -gGGCcUGAGGGCAgGGCCU---GCCa -3'
miRNA:   3'- uaCCGuACUUCCGUgUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 61289 0.69 0.891322
Target:  5'- uGUGGCcccGUGggGGCGCAgacggcccuucGCCUGgaucUGCa -3'
miRNA:   3'- -UACCG---UACuuCCGUGU-----------CGGACa---AUGg -5'
33605 5' -52.5 NC_007605.1 + 20902 0.69 0.891322
Target:  5'- cGUGGUcgGcuGGCACcaGGCCUG--GCCa -3'
miRNA:   3'- -UACCGuaCuuCCGUG--UCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 157809 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 154740 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 148603 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 145534 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 142465 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 139396 0.68 0.94366
Target:  5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 88995 0.68 0.938865
Target:  5'- -gGGUccGAGGGCGgGGCCU---GCCa -3'
miRNA:   3'- uaCCGuaCUUCCGUgUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 105760 0.68 0.933815
Target:  5'- uUGGCAUagaagggguaGAAGGCguccgACAGCCcGUcACCu -3'
miRNA:   3'- uACCGUA----------CUUCCG-----UGUCGGaCAaUGG- -5'
33605 5' -52.5 NC_007605.1 + 98708 0.68 0.933296
Target:  5'- -cGGCGUGAGGuacugcgccucauGCGCcGCCUGgguCCa -3'
miRNA:   3'- uaCCGUACUUC-------------CGUGuCGGACaauGG- -5'
33605 5' -52.5 NC_007605.1 + 151672 0.68 0.928509
Target:  5'- -gGGCGggaGggGGCugGGCCUc--ACCu -3'
miRNA:   3'- uaCCGUa--CuuCCGugUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 95408 0.68 0.922376
Target:  5'- gGUGGCGgcgagGAAgagcaguGGCACAGCCU-UUGCa -3'
miRNA:   3'- -UACCGUa----CUU-------CCGUGUCGGAcAAUGg -5'
33605 5' -52.5 NC_007605.1 + 44718 0.69 0.917128
Target:  5'- -aGGCGcaggagGGAGGCGCAGUCUagcagGCCu -3'
miRNA:   3'- uaCCGUa-----CUUCCGUGUCGGAcaa--UGG- -5'
33605 5' -52.5 NC_007605.1 + 48342 0.69 0.904727
Target:  5'- -aGGCccGggGGCAgCAGUUUGagACCg -3'
miRNA:   3'- uaCCGuaCuuCCGU-GUCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 123943 0.69 0.902126
Target:  5'- cUGGCGUaGAGGcCACAGCCgccucagaagcugGggGCCu -3'
miRNA:   3'- uACCGUAcUUCC-GUGUCGGa------------CaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 36826 0.69 0.898149
Target:  5'- cAUGGCGgccuGGCACGGCCU--UACUc -3'
miRNA:   3'- -UACCGUacuuCCGUGUCGGAcaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 43742 0.69 0.898149
Target:  5'- gGUGGCAUcGAAGGU--GGCUUGggGCUc -3'
miRNA:   3'- -UACCGUA-CUUCCGugUCGGACaaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.