Results 101 - 104 of 104 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 48342 | 0.69 | 0.904727 |
Target: 5'- -aGGCccGggGGCAgCAGUUUGagACCg -3' miRNA: 3'- uaCCGuaCuuCCGU-GUCGGACaaUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 123943 | 0.69 | 0.902126 |
Target: 5'- cUGGCGUaGAGGcCACAGCCgccucagaagcugGggGCCu -3' miRNA: 3'- uACCGUAcUUCC-GUGUCGGa------------CaaUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 36826 | 0.69 | 0.898149 |
Target: 5'- cAUGGCGgccuGGCACGGCCU--UACUc -3' miRNA: 3'- -UACCGUacuuCCGUGUCGGAcaAUGG- -5' |
|||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 78322 | 0.79 | 0.426907 |
Target: 5'- -gGGCAUGGAGGCAUAGCCacUGcgGCa -3' miRNA: 3'- uaCCGUACUUCCGUGUCGG--ACaaUGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home