Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33605 | 5' | -52.5 | NC_007605.1 | + | 125679 | 0.66 | 0.970374 |
Target: 5'- -cGGaa-GAAGGCAUAGCCUacccACCa -3' miRNA: 3'- uaCCguaCUUCCGUGUCGGAcaa-UGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 154993 | 0.67 | 0.956545 |
Target: 5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3' miRNA: 3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 34597 | 0.68 | 0.948204 |
Target: 5'- -gGGgGUGGAGGCugcGCCUGagcUGCCu -3' miRNA: 3'- uaCCgUACUUCCGuguCGGACa--AUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 112587 | 0.67 | 0.960351 |
Target: 5'- --cGCAUccuAGGCACGGCCUcGUgcaACCa -3' miRNA: 3'- uacCGUAcu-UCCGUGUCGGA-CAa--UGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 157809 | 0.68 | 0.94366 |
Target: 5'- -gGGCGggaGggGGCugGGCCUcacccucgGggACCc -3' miRNA: 3'- uaCCGUa--CuuCCGugUCGGA--------CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 111370 | 0.66 | 0.980725 |
Target: 5'- -cGGCcacccucaGAAGGCGCcuCCUGgUGCCg -3' miRNA: 3'- uaCCGua------CUUCCGUGucGGACaAUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 139649 | 0.67 | 0.956545 |
Target: 5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3' miRNA: 3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 78322 | 0.79 | 0.426907 |
Target: 5'- -gGGCAUGGAGGCAUAGCCacUGcgGCa -3' miRNA: 3'- uaCCGUACUUCCGUGUCGG--ACaaUGg -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 151592 | 0.66 | 0.980505 |
Target: 5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3' miRNA: 3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 142385 | 0.66 | 0.980505 |
Target: 5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3' miRNA: 3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 139316 | 0.66 | 0.980505 |
Target: 5'- uUGGCAggccuggUGAcaGGGCGCgcauGGCCUGa-GCCu -3' miRNA: 3'- uACCGU-------ACU--UCCGUG----UCGGACaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 131294 | 0.66 | 0.975955 |
Target: 5'- cUGGCAccAGGGUcCGGCCUGggAgCg -3' miRNA: 3'- uACCGUacUUCCGuGUCGGACaaUgG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 28479 | 0.66 | 0.975955 |
Target: 5'- cUGGCAccAGGGUcCGGCCUGggAgCg -3' miRNA: 3'- uACCGUacUUCCGuGUCGGACaaUgG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 20980 | 0.67 | 0.960351 |
Target: 5'- -gGGCcgagGAGGGCugGGUCUGcgACg -3' miRNA: 3'- uaCCGua--CUUCCGugUCGGACaaUGg -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 117915 | 0.67 | 0.960351 |
Target: 5'- cUGGCcuuagcUGggGGCGCGgguGCCUGgcugaACCu -3' miRNA: 3'- uACCGu-----ACuuCCGUGU---CGGACaa---UGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 112737 | 0.67 | 0.956545 |
Target: 5'- cUGGaCGaGggGGCGCGGCUgGaUGCCc -3' miRNA: 3'- uACC-GUaCuuCCGUGUCGGaCaAUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 76432 | 0.67 | 0.956545 |
Target: 5'- -gGGCAacgGAagaaaagcuGGGUGCGGCCUGUgaggauCCa -3' miRNA: 3'- uaCCGUa--CU---------UCCGUGUCGGACAau----GG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 151924 | 0.67 | 0.956545 |
Target: 5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3' miRNA: 3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 148855 | 0.67 | 0.956545 |
Target: 5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3' miRNA: 3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' |
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33605 | 5' | -52.5 | NC_007605.1 | + | 142717 | 0.67 | 0.956545 |
Target: 5'- -aGGgGUGGacgAGGCugGGCCcgGgaGCCg -3' miRNA: 3'- uaCCgUACU---UCCGugUCGGa-CaaUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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