miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 140840 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 138090 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 141159 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 144228 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 147297 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 150366 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 153435 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 156504 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 159573 0.72 0.782606
Target:  5'- gGUGGCAgGAGGGgaGCAGCaggGUUGCUg -3'
miRNA:   3'- -UACCGUaCUUCCg-UGUCGga-CAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 35367 0.72 0.772977
Target:  5'- --aGCAUGguGGCugGGUCUGUggagGCCg -3'
miRNA:   3'- uacCGUACuuCCGugUCGGACAa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 89082 0.74 0.691946
Target:  5'- -gGGCcUGAGGGCAgGGCCU---GCCa -3'
miRNA:   3'- uaCCGuACUUCCGUgUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 153116 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 156185 0.66 0.980725
Target:  5'- --uGCcgGggGGCcCuGCCUGUcucUGCCc -3'
miRNA:   3'- uacCGuaCuuCCGuGuCGGACA---AUGG- -5'
33605 5' -52.5 NC_007605.1 + 111370 0.66 0.980725
Target:  5'- -cGGCcacccucaGAAGGCGCcuCCUGgUGCCg -3'
miRNA:   3'- uaCCGua------CUUCCGUGucGGACaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 131294 0.66 0.975955
Target:  5'- cUGGCAccAGGGUcCGGCCUGggAgCg -3'
miRNA:   3'- uACCGUacUUCCGuGUCGGACaaUgG- -5'
33605 5' -52.5 NC_007605.1 + 78322 0.79 0.426907
Target:  5'- -gGGCAUGGAGGCAUAGCCacUGcgGCa -3'
miRNA:   3'- uaCCGUACUUCCGUGUCGG--ACaaUGg -5'
33605 5' -52.5 NC_007605.1 + 122512 0.69 0.898149
Target:  5'- gGUGGC-UGAAGGC-UGGCCcGUUguagGCCa -3'
miRNA:   3'- -UACCGuACUUCCGuGUCGGaCAA----UGG- -5'
33605 5' -52.5 NC_007605.1 + 122098 0.66 0.980725
Target:  5'- cUGGCcgguUGAAGGCuuccACGGCCcGcUGCUg -3'
miRNA:   3'- uACCGu---ACUUCCG----UGUCGGaCaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 150934 0.67 0.956545
Target:  5'- -aGGCGUGAuccuGGGCGCAaUCU-UUGCCg -3'
miRNA:   3'- uaCCGUACU----UCCGUGUcGGAcAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 4062 0.67 0.952497
Target:  5'- -gGGCGUGAAgcugaccuuuGGCuCGGCCUccUGCCc -3'
miRNA:   3'- uaCCGUACUU----------CCGuGUCGGAcaAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.