miRNA display CGI


Results 81 - 100 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33605 5' -52.5 NC_007605.1 + 137029 0.69 0.911054
Target:  5'- -aGGCAgcucAGGCGCAGCCUcc-ACCc -3'
miRNA:   3'- uaCCGUacu-UCCGUGUCGGAcaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 122512 0.69 0.898149
Target:  5'- gGUGGC-UGAAGGC-UGGCCcGUUguagGCCa -3'
miRNA:   3'- -UACCGuACUUCCGuGUCGGaCAA----UGG- -5'
33605 5' -52.5 NC_007605.1 + 48466 0.69 0.898149
Target:  5'- -gGGCcgGggGGCcCuGCCUGa-GCCg -3'
miRNA:   3'- uaCCGuaCuuCCGuGuCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 89902 0.7 0.864761
Target:  5'- -gGGCAcaucugcuucaacaGGAGGCGCAGCCUGUc--- -3'
miRNA:   3'- uaCCGUa-------------CUUCCGUGUCGGACAaugg -5'
33605 5' -52.5 NC_007605.1 + 54778 0.67 0.952497
Target:  5'- cUGGCAgcagGGAGGC-CAGCagggUGUU-CCa -3'
miRNA:   3'- uACCGUa---CUUCCGuGUCGg---ACAAuGG- -5'
33605 5' -52.5 NC_007605.1 + 63613 0.73 0.70652
Target:  5'- gGUGGCGgugGAguaugcuucgucgggGGGCugGGCCUGcaGCCg -3'
miRNA:   3'- -UACCGUa--CU---------------UCCGugUCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 4062 0.67 0.952497
Target:  5'- -gGGCGUGAAgcugaccuuuGGCuCGGCCUccUGCCc -3'
miRNA:   3'- uaCCGUACUU----------CCGuGUCGGAcaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 150934 0.67 0.956545
Target:  5'- -aGGCGUGAuccuGGGCGCAaUCU-UUGCCg -3'
miRNA:   3'- uaCCGUACU----UCCGUGUcGGAcAAUGG- -5'
33605 5' -52.5 NC_007605.1 + 122098 0.66 0.980725
Target:  5'- cUGGCcgguUGAAGGCuuccACGGCCcGcUGCUg -3'
miRNA:   3'- uACCGu---ACUUCCG----UGUCGGaCaAUGG- -5'
33605 5' -52.5 NC_007605.1 + 77827 0.66 0.980725
Target:  5'- uUGGCcUGuGGuaACAGCCUGgUUGCa -3'
miRNA:   3'- uACCGuACuUCcgUGUCGGAC-AAUGg -5'
33605 5' -52.5 NC_007605.1 + 70061 0.66 0.980725
Target:  5'- uUGGCGUcaGGAGaCACGGCuCUGUcaguuaucaccgUACCa -3'
miRNA:   3'- uACCGUA--CUUCcGUGUCG-GACA------------AUGG- -5'
33605 5' -52.5 NC_007605.1 + 128380 0.66 0.975955
Target:  5'- -cGGCucuuGUGccaaGGGGCugAGCUUGgcACCa -3'
miRNA:   3'- uaCCG----UAC----UUCCGugUCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 147244 0.66 0.975696
Target:  5'- cUGGUAaGggGGCugGugcggacGCCUGUguuuagucuaUGCCa -3'
miRNA:   3'- uACCGUaCuuCCGugU-------CGGACA----------AUGG- -5'
33605 5' -52.5 NC_007605.1 + 104589 0.66 0.97327
Target:  5'- cGUGGCuuccagaGAGGCGCAGCCca--GCCc -3'
miRNA:   3'- -UACCGuac----UUCCGUGUCGGacaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 65308 0.66 0.97327
Target:  5'- cUGGCgGUGcGGGCACAGCgg---GCCg -3'
miRNA:   3'- uACCG-UACuUCCGUGUCGgacaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 55740 0.66 0.97299
Target:  5'- -aGGCGggagagaUGggGGC---GCCUGggGCCg -3'
miRNA:   3'- uaCCGU-------ACuuCCGuguCGGACaaUGG- -5'
33605 5' -52.5 NC_007605.1 + 60252 0.66 0.970374
Target:  5'- -cGGCAccaGGAGGCGCcuucugaggguGGCCgUGUcgGCCg -3'
miRNA:   3'- uaCCGUa--CUUCCGUG-----------UCGG-ACAa-UGG- -5'
33605 5' -52.5 NC_007605.1 + 155355 0.67 0.96726
Target:  5'- -aGGCGgggGAuGGCGCGGCggcagCUGU-ACCa -3'
miRNA:   3'- uaCCGUa--CUuCCGUGUCG-----GACAaUGG- -5'
33605 5' -52.5 NC_007605.1 + 169644 0.67 0.96726
Target:  5'- -gGGUcgGggGGCGCcGCCgGgcgcaGCCa -3'
miRNA:   3'- uaCCGuaCuuCCGUGuCGGaCaa---UGG- -5'
33605 5' -52.5 NC_007605.1 + 119433 0.67 0.963921
Target:  5'- --aGCGUGGAGGCuCAGCUaggGUcucUGCCu -3'
miRNA:   3'- uacCGUACUUCCGuGUCGGa--CA---AUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.