miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33606 3' -50.9 NC_007605.1 + 114608 0.66 0.996807
Target:  5'- gGCUACUagcUgGGAAGCagccccaaccaGCCcACCCGGg -3'
miRNA:   3'- -CGAUGAga-AgCCUUUG-----------CGGuUGGGUC- -5'
33606 3' -50.9 NC_007605.1 + 36945 0.66 0.996807
Target:  5'- gGCUcaGCUUggggccacCGGGGAgGCCAgguaGCCCAGc -3'
miRNA:   3'- -CGA--UGAGaa------GCCUUUgCGGU----UGGGUC- -5'
33606 3' -50.9 NC_007605.1 + 2289 0.66 0.996247
Target:  5'- uCUGCUgCUUCGucaccCGCCGACCCu- -3'
miRNA:   3'- cGAUGA-GAAGCcuuu-GCGGUUGGGuc -5'
33606 3' -50.9 NC_007605.1 + 153188 0.66 0.995186
Target:  5'- aGCUugUCgaaaUaaugauccacggccaCGGGAACGCCGugCCGc -3'
miRNA:   3'- -CGAugAGa---A---------------GCCUUUGCGGUugGGUc -5'
33606 3' -50.9 NC_007605.1 + 114447 0.66 0.994885
Target:  5'- gGCUACUgUUCGcGGcgGAUGCCaugacGugCCAGa -3'
miRNA:   3'- -CGAUGAgAAGC-CU--UUGCGG-----UugGGUC- -5'
33606 3' -50.9 NC_007605.1 + 135528 0.66 0.994068
Target:  5'- uCUGCggCUUCGuGGAGCGCCcggacGCCCc- -3'
miRNA:   3'- cGAUGa-GAAGC-CUUUGCGGu----UGGGuc -5'
33606 3' -50.9 NC_007605.1 + 105132 0.66 0.994068
Target:  5'- gGCUcCUCUgaaggaugggCGGAGGuuggUGCCAcaaaGCCCAGg -3'
miRNA:   3'- -CGAuGAGAa---------GCCUUU----GCGGU----UGGGUC- -5'
33606 3' -50.9 NC_007605.1 + 96274 0.66 0.994068
Target:  5'- aGCUGCacCUUCgaGGAggUGCCgAGCCUGGc -3'
miRNA:   3'- -CGAUGa-GAAG--CCUuuGCGG-UUGGGUC- -5'
33606 3' -50.9 NC_007605.1 + 184 0.66 0.994068
Target:  5'- uCUACUCUU-GGcagcAGugGCCAGCUCAu -3'
miRNA:   3'- cGAUGAGAAgCC----UUugCGGUUGGGUc -5'
33606 3' -50.9 NC_007605.1 + 41067 0.66 0.993148
Target:  5'- uGCUAUgggaggUGGggGCuGCCAGCCuCAGc -3'
miRNA:   3'- -CGAUGagaa--GCCuuUG-CGGUUGG-GUC- -5'
33606 3' -50.9 NC_007605.1 + 118821 0.66 0.993148
Target:  5'- aGCUGCU--UCGGGAauACGUCucugcGCCCAa -3'
miRNA:   3'- -CGAUGAgaAGCCUU--UGCGGu----UGGGUc -5'
33606 3' -50.9 NC_007605.1 + 74596 0.67 0.992117
Target:  5'- gGCUcugGCUCUUUG-----GCCGGCCCAGg -3'
miRNA:   3'- -CGA---UGAGAAGCcuuugCGGUUGGGUC- -5'
33606 3' -50.9 NC_007605.1 + 8827 0.67 0.990968
Target:  5'- aGCUACguggCGGggGCggccGCCAGuCCCAu -3'
miRNA:   3'- -CGAUGagaaGCCuuUG----CGGUU-GGGUc -5'
33606 3' -50.9 NC_007605.1 + 97183 0.67 0.990968
Target:  5'- -----cCUUUGGAAugGCCccugGACCCGGc -3'
miRNA:   3'- cgaugaGAAGCCUUugCGG----UUGGGUC- -5'
33606 3' -50.9 NC_007605.1 + 126445 0.67 0.990846
Target:  5'- uCUAUUCUUuaCGGAcggggugGGgGCCAACCUAGc -3'
miRNA:   3'- cGAUGAGAA--GCCU-------UUgCGGUUGGGUC- -5'
33606 3' -50.9 NC_007605.1 + 162196 0.67 0.988275
Target:  5'- aGCcACUCUg-GGggGCucugGCCAaGCCCGGg -3'
miRNA:   3'- -CGaUGAGAagCCuuUG----CGGU-UGGGUC- -5'
33606 3' -50.9 NC_007605.1 + 163443 0.67 0.986383
Target:  5'- aGCUccaccaGCUUgcccacccgUCGGAcgcgcagcgccuGCGCCAGCCCGGu -3'
miRNA:   3'- -CGA------UGAGa--------AGCCUu-----------UGCGGUUGGGUC- -5'
33606 3' -50.9 NC_007605.1 + 60979 0.68 0.983117
Target:  5'- cGCUGC-CgaaGGAGACcaGCCAGCgCAGg -3'
miRNA:   3'- -CGAUGaGaagCCUUUG--CGGUUGgGUC- -5'
33606 3' -50.9 NC_007605.1 + 90333 0.68 0.976408
Target:  5'- aGCUGCUaggugaauggUUGGGGguucugggacuuGCGCCGACCCGu -3'
miRNA:   3'- -CGAUGAga--------AGCCUU------------UGCGGUUGGGUc -5'
33606 3' -50.9 NC_007605.1 + 99842 0.69 0.973787
Target:  5'- uGCUGCUUUccUCGGAugccaaagaaGACGUugagaugcgugUAGCCCAGa -3'
miRNA:   3'- -CGAUGAGA--AGCCU----------UUGCG-----------GUUGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.