miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33606 5' -59.2 NC_007605.1 + 108877 0.66 0.817465
Target:  5'- gUCUGGggacgaCCCC--GCUgCCCGCC-UGCGc -3'
miRNA:   3'- gAGACC------GGGGuaUGA-GGGCGGuACGC- -5'
33606 5' -59.2 NC_007605.1 + 58677 0.66 0.817465
Target:  5'- -aCUGGgccaCCCCGUugUaaCUGCCGUGCa -3'
miRNA:   3'- gaGACC----GGGGUAugAg-GGCGGUACGc -5'
33606 5' -59.2 NC_007605.1 + 138634 0.66 0.808965
Target:  5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3'
miRNA:   3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 81477 0.66 0.808965
Target:  5'- -gCUGGgCCUAUugUCCgGCCcUGgGa -3'
miRNA:   3'- gaGACCgGGGUAugAGGgCGGuACgC- -5'
33606 5' -59.2 NC_007605.1 + 147840 0.66 0.808965
Target:  5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3'
miRNA:   3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 157047 0.66 0.808965
Target:  5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3'
miRNA:   3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 144771 0.66 0.808965
Target:  5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3'
miRNA:   3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 150909 0.66 0.808965
Target:  5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3'
miRNA:   3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 153978 0.66 0.808965
Target:  5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3'
miRNA:   3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 113070 0.66 0.800313
Target:  5'- ---cGGCCCCGggcACcCCCGcCCAUGUc -3'
miRNA:   3'- gagaCCGGGGUa--UGaGGGC-GGUACGc -5'
33606 5' -59.2 NC_007605.1 + 113478 0.66 0.791516
Target:  5'- cCUCUgcGGCCCCGgccucUGCggcCCCGgCCucUGCGg -3'
miRNA:   3'- -GAGA--CCGGGGU-----AUGa--GGGC-GGu-ACGC- -5'
33606 5' -59.2 NC_007605.1 + 17686 0.66 0.791516
Target:  5'- ---aGGCCCUgaGC-CCCGCCAaccUGCa -3'
miRNA:   3'- gagaCCGGGGuaUGaGGGCGGU---ACGc -5'
33606 5' -59.2 NC_007605.1 + 110942 0.66 0.791516
Target:  5'- ---cGGCCCCGUaGCUccCCCGCCccaGCa -3'
miRNA:   3'- gagaCCGGGGUA-UGA--GGGCGGua-CGc -5'
33606 5' -59.2 NC_007605.1 + 67672 0.66 0.791516
Target:  5'- ---aGGCCCCcgGCUggCCGCCGUGg- -3'
miRNA:   3'- gagaCCGGGGuaUGAg-GGCGGUACgc -5'
33606 5' -59.2 NC_007605.1 + 109314 0.66 0.790629
Target:  5'- aUCUGGCCCgGUGggacgccUUCCCGCgGgagggGCu -3'
miRNA:   3'- gAGACCGGGgUAU-------GAGGGCGgUa----CGc -5'
33606 5' -59.2 NC_007605.1 + 73314 0.66 0.782583
Target:  5'- -aCUGGCCCCGgcaggugGCcuggCCgGCCAaGCa -3'
miRNA:   3'- gaGACCGGGGUa------UGa---GGgCGGUaCGc -5'
33606 5' -59.2 NC_007605.1 + 48751 0.66 0.782583
Target:  5'- -cCUGGaCCCUAaccUGCUCCC-CCcgGUGg -3'
miRNA:   3'- gaGACC-GGGGU---AUGAGGGcGGuaCGC- -5'
33606 5' -59.2 NC_007605.1 + 155716 0.66 0.773521
Target:  5'- -gCUGGCCCCAUcggcCUUgCGCCG-GCc -3'
miRNA:   3'- gaGACCGGGGUAu---GAGgGCGGUaCGc -5'
33606 5' -59.2 NC_007605.1 + 117085 0.66 0.773521
Target:  5'- cCUCUGGCCagaCuggACgcuuggCCCGCCAcccccGCGg -3'
miRNA:   3'- -GAGACCGGg--Gua-UGa-----GGGCGGUa----CGC- -5'
33606 5' -59.2 NC_007605.1 + 94900 0.67 0.754111
Target:  5'- cCUCcGGCCCCA---UCCCGCgagccccagcagaCAUGCu -3'
miRNA:   3'- -GAGaCCGGGGUaugAGGGCG-------------GUACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.