Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33606 | 5' | -59.2 | NC_007605.1 | + | 136655 | 0.67 | 0.736158 |
Target: 5'- uCUUUGGCCCCc--CUCCaC-CCGUGCc -3' miRNA: 3'- -GAGACCGGGGuauGAGG-GcGGUACGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 113070 | 0.66 | 0.800313 |
Target: 5'- ---cGGCCCCGggcACcCCCGcCCAUGUc -3' miRNA: 3'- gagaCCGGGGUa--UGaGGGC-GGUACGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 138634 | 0.66 | 0.808965 |
Target: 5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3' miRNA: 3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 58677 | 0.66 | 0.817465 |
Target: 5'- -aCUGGgccaCCCCGUugUaaCUGCCGUGCa -3' miRNA: 3'- gaGACC----GGGGUAugAg-GGCGGUACGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 144771 | 0.66 | 0.808965 |
Target: 5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3' miRNA: 3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 147840 | 0.66 | 0.808965 |
Target: 5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3' miRNA: 3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 150909 | 0.66 | 0.808965 |
Target: 5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3' miRNA: 3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 153978 | 0.66 | 0.808965 |
Target: 5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3' miRNA: 3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 157047 | 0.66 | 0.808965 |
Target: 5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3' miRNA: 3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 113478 | 0.66 | 0.791516 |
Target: 5'- cCUCUgcGGCCCCGgccucUGCggcCCCGgCCucUGCGg -3' miRNA: 3'- -GAGA--CCGGGGU-----AUGa--GGGC-GGu-ACGC- -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 17686 | 0.66 | 0.791516 |
Target: 5'- ---aGGCCCUgaGC-CCCGCCAaccUGCa -3' miRNA: 3'- gagaCCGGGGuaUGaGGGCGGU---ACGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 109314 | 0.66 | 0.790629 |
Target: 5'- aUCUGGCCCgGUGggacgccUUCCCGCgGgagggGCu -3' miRNA: 3'- gAGACCGGGgUAU-------GAGGGCGgUa----CGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 48751 | 0.66 | 0.782583 |
Target: 5'- -cCUGGaCCCUAaccUGCUCCC-CCcgGUGg -3' miRNA: 3'- gaGACC-GGGGU---AUGAGGGcGGuaCGC- -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 117085 | 0.66 | 0.773521 |
Target: 5'- cCUCUGGCCagaCuggACgcuuggCCCGCCAcccccGCGg -3' miRNA: 3'- -GAGACCGGg--Gua-UGa-----GGGCGGUa----CGC- -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 155716 | 0.66 | 0.773521 |
Target: 5'- -gCUGGCCCCAUcggcCUUgCGCCG-GCc -3' miRNA: 3'- gaGACCGGGGUAu---GAGgGCGGUaCGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 73314 | 0.66 | 0.782583 |
Target: 5'- -aCUGGCCCCGgcaggugGCcuggCCgGCCAaGCa -3' miRNA: 3'- gaGACCGGGGUa------UGa---GGgCGGUaCGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 67672 | 0.66 | 0.791516 |
Target: 5'- ---aGGCCCCcgGCUggCCGCCGUGg- -3' miRNA: 3'- gagaCCGGGGuaUGAg-GGCGGUACgc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 110942 | 0.66 | 0.791516 |
Target: 5'- ---cGGCCCCGUaGCUccCCCGCCccaGCa -3' miRNA: 3'- gagaCCGGGGUA-UGA--GGGCGGua-CGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 81477 | 0.66 | 0.808965 |
Target: 5'- -gCUGGgCCUAUugUCCgGCCcUGgGa -3' miRNA: 3'- gaGACCgGGGUAugAGGgCGGuACgC- -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 108877 | 0.66 | 0.817465 |
Target: 5'- gUCUGGggacgaCCCC--GCUgCCCGCC-UGCGc -3' miRNA: 3'- gAGACC------GGGGuaUGA-GGGCGGuACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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