Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33606 | 5' | -59.2 | NC_007605.1 | + | 148702 | 1.03 | 0.004117 |
Target: 5'- -cCUGGCCCCAUACUCCCGCCAUGCGa -3' miRNA: 3'- gaGACCGGGGUAUGAGGGCGGUACGC- -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 89516 | 0.76 | 0.284004 |
Target: 5'- uCUUUGuCCCCAUACUCCUGCUcgGCc -3' miRNA: 3'- -GAGACcGGGGUAUGAGGGCGGuaCGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 49323 | 0.74 | 0.339688 |
Target: 5'- -gCUGGCCCCGaa-UCCCGCCGacaaGCGg -3' miRNA: 3'- gaGACCGGGGUaugAGGGCGGUa---CGC- -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 59301 | 0.73 | 0.419792 |
Target: 5'- ---aGGCCCgGaGCUCCgGCCGUGUGg -3' miRNA: 3'- gagaCCGGGgUaUGAGGgCGGUACGC- -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 111251 | 0.72 | 0.437136 |
Target: 5'- uCUCUGGCCUCAaGCUCCUGCuCAcggaGCu -3' miRNA: 3'- -GAGACCGGGGUaUGAGGGCG-GUa---CGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 151491 | 0.71 | 0.50087 |
Target: 5'- cCUCUGGUCCCuauCUccaCCCGCCAgGCc -3' miRNA: 3'- -GAGACCGGGGuauGA---GGGCGGUaCGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 115881 | 0.7 | 0.542955 |
Target: 5'- cCUC-GGCCCCAggcgcccccaucuCUCCCGCCucucccucUGCGa -3' miRNA: 3'- -GAGaCCGGGGUau-----------GAGGGCGGu-------ACGC- -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 164770 | 0.7 | 0.578226 |
Target: 5'- -gCUGGCCUCAUGgUCUCGUCAgGCc -3' miRNA: 3'- gaGACCGGGGUAUgAGGGCGGUaCGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 38510 | 0.7 | 0.578226 |
Target: 5'- -cCUGGCCCUuucggcCUCCCGCUcUGCc -3' miRNA: 3'- gaGACCGGGGuau---GAGGGCGGuACGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 107223 | 0.7 | 0.58812 |
Target: 5'- uUCUGGCCUCAguucUACacgCCUGCgCAUGUGu -3' miRNA: 3'- gAGACCGGGGU----AUGa--GGGCG-GUACGC- -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 56252 | 0.69 | 0.614966 |
Target: 5'- ---gGGCCCCAUACUCUaucgcugucaacagCGCCAaaaaGCGg -3' miRNA: 3'- gagaCCGGGGUAUGAGG--------------GCGGUa---CGC- -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 3020 | 0.69 | 0.627932 |
Target: 5'- uUCUcGGCCCUGUAC-CCgGCCccGUGCa -3' miRNA: 3'- gAGA-CCGGGGUAUGaGGgCGG--UACGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 109976 | 0.69 | 0.627932 |
Target: 5'- cCUCUGuGCCCCGggugUCCCGCUc-GCGg -3' miRNA: 3'- -GAGAC-CGGGGUaug-AGGGCGGuaCGC- -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 141703 | 0.68 | 0.667789 |
Target: 5'- cCUCUGGCCCgAUACggggggCCCggGCCggGUu -3' miRNA: 3'- -GAGACCGGGgUAUGa-----GGG--CGGuaCGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 101842 | 0.68 | 0.667789 |
Target: 5'- cCUCUGGCgCCCucgGCUCCUcgGCCAUu-- -3' miRNA: 3'- -GAGACCG-GGGua-UGAGGG--CGGUAcgc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 70312 | 0.68 | 0.677704 |
Target: 5'- uCUCUGGCCCCGccuuugaGgUCCUGagagaCAUGCa -3' miRNA: 3'- -GAGACCGGGGUa------UgAGGGCg----GUACGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 166641 | 0.68 | 0.677704 |
Target: 5'- -cCUGGCCCCAUgaACUCCU-CCGaugGCa -3' miRNA: 3'- gaGACCGGGGUA--UGAGGGcGGUa--CGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 63642 | 0.67 | 0.716926 |
Target: 5'- -gCUgGGCCugcagCCGUGC-CCCGCCgAUGCGc -3' miRNA: 3'- gaGA-CCGG-----GGUAUGaGGGCGG-UACGC- -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 48602 | 0.67 | 0.726581 |
Target: 5'- gUCUGGCCCgGauuaccCUCCCuugGCCGUGUu -3' miRNA: 3'- gAGACCGGGgUau----GAGGG---CGGUACGc -5' |
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33606 | 5' | -59.2 | NC_007605.1 | + | 136655 | 0.67 | 0.736158 |
Target: 5'- uCUUUGGCCCCc--CUCCaC-CCGUGCc -3' miRNA: 3'- -GAGACCGGGGuauGAGG-GcGGUACGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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