miRNA display CGI


Results 21 - 40 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33606 5' -59.2 NC_007605.1 + 136655 0.67 0.736158
Target:  5'- uCUUUGGCCCCc--CUCCaC-CCGUGCc -3'
miRNA:   3'- -GAGACCGGGGuauGAGG-GcGGUACGc -5'
33606 5' -59.2 NC_007605.1 + 48602 0.67 0.726581
Target:  5'- gUCUGGCCCgGauuaccCUCCCuugGCCGUGUu -3'
miRNA:   3'- gAGACCGGGgUau----GAGGG---CGGUACGc -5'
33606 5' -59.2 NC_007605.1 + 63642 0.67 0.716926
Target:  5'- -gCUgGGCCugcagCCGUGC-CCCGCCgAUGCGc -3'
miRNA:   3'- gaGA-CCGG-----GGUAUGaGGGCGG-UACGC- -5'
33606 5' -59.2 NC_007605.1 + 70312 0.68 0.677704
Target:  5'- uCUCUGGCCCCGccuuugaGgUCCUGagagaCAUGCa -3'
miRNA:   3'- -GAGACCGGGGUa------UgAGGGCg----GUACGc -5'
33606 5' -59.2 NC_007605.1 + 166641 0.68 0.677704
Target:  5'- -cCUGGCCCCAUgaACUCCU-CCGaugGCa -3'
miRNA:   3'- gaGACCGGGGUA--UGAGGGcGGUa--CGc -5'
33606 5' -59.2 NC_007605.1 + 141703 0.68 0.667789
Target:  5'- cCUCUGGCCCgAUACggggggCCCggGCCggGUu -3'
miRNA:   3'- -GAGACCGGGgUAUGa-----GGG--CGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 101842 0.68 0.667789
Target:  5'- cCUCUGGCgCCCucgGCUCCUcgGCCAUu-- -3'
miRNA:   3'- -GAGACCG-GGGua-UGAGGG--CGGUAcgc -5'
33606 5' -59.2 NC_007605.1 + 109976 0.69 0.627932
Target:  5'- cCUCUGuGCCCCGggugUCCCGCUc-GCGg -3'
miRNA:   3'- -GAGAC-CGGGGUaug-AGGGCGGuaCGC- -5'
33606 5' -59.2 NC_007605.1 + 3020 0.69 0.627932
Target:  5'- uUCUcGGCCCUGUAC-CCgGCCccGUGCa -3'
miRNA:   3'- gAGA-CCGGGGUAUGaGGgCGG--UACGc -5'
33606 5' -59.2 NC_007605.1 + 56252 0.69 0.614966
Target:  5'- ---gGGCCCCAUACUCUaucgcugucaacagCGCCAaaaaGCGg -3'
miRNA:   3'- gagaCCGGGGUAUGAGG--------------GCGGUa---CGC- -5'
33606 5' -59.2 NC_007605.1 + 107223 0.7 0.58812
Target:  5'- uUCUGGCCUCAguucUACacgCCUGCgCAUGUGu -3'
miRNA:   3'- gAGACCGGGGU----AUGa--GGGCG-GUACGC- -5'
33606 5' -59.2 NC_007605.1 + 164770 0.7 0.578226
Target:  5'- -gCUGGCCUCAUGgUCUCGUCAgGCc -3'
miRNA:   3'- gaGACCGGGGUAUgAGGGCGGUaCGc -5'
33606 5' -59.2 NC_007605.1 + 38510 0.7 0.578226
Target:  5'- -cCUGGCCCUuucggcCUCCCGCUcUGCc -3'
miRNA:   3'- gaGACCGGGGuau---GAGGGCGGuACGc -5'
33606 5' -59.2 NC_007605.1 + 115881 0.7 0.542955
Target:  5'- cCUC-GGCCCCAggcgcccccaucuCUCCCGCCucucccucUGCGa -3'
miRNA:   3'- -GAGaCCGGGGUau-----------GAGGGCGGu-------ACGC- -5'
33606 5' -59.2 NC_007605.1 + 151491 0.71 0.50087
Target:  5'- cCUCUGGUCCCuauCUccaCCCGCCAgGCc -3'
miRNA:   3'- -GAGACCGGGGuauGA---GGGCGGUaCGc -5'
33606 5' -59.2 NC_007605.1 + 111251 0.72 0.437136
Target:  5'- uCUCUGGCCUCAaGCUCCUGCuCAcggaGCu -3'
miRNA:   3'- -GAGACCGGGGUaUGAGGGCG-GUa---CGc -5'
33606 5' -59.2 NC_007605.1 + 59301 0.73 0.419792
Target:  5'- ---aGGCCCgGaGCUCCgGCCGUGUGg -3'
miRNA:   3'- gagaCCGGGgUaUGAGGgCGGUACGC- -5'
33606 5' -59.2 NC_007605.1 + 49323 0.74 0.339688
Target:  5'- -gCUGGCCCCGaa-UCCCGCCGacaaGCGg -3'
miRNA:   3'- gaGACCGGGGUaugAGGGCGGUa---CGC- -5'
33606 5' -59.2 NC_007605.1 + 89516 0.76 0.284004
Target:  5'- uCUUUGuCCCCAUACUCCUGCUcgGCc -3'
miRNA:   3'- -GAGACcGGGGUAUGAGGGCGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 148702 1.03 0.004117
Target:  5'- -cCUGGCCCCAUACUCCCGCCAUGCGa -3'
miRNA:   3'- gaGACCGGGGUAUGAGGGCGGUACGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.