miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33606 5' -59.2 NC_007605.1 + 3020 0.69 0.627932
Target:  5'- uUCUcGGCCCUGUAC-CCgGCCccGUGCa -3'
miRNA:   3'- gAGA-CCGGGGUAUGaGGgCGG--UACGc -5'
33606 5' -59.2 NC_007605.1 + 17686 0.66 0.791516
Target:  5'- ---aGGCCCUgaGC-CCCGCCAaccUGCa -3'
miRNA:   3'- gagaCCGGGGuaUGaGGGCGGU---ACGc -5'
33606 5' -59.2 NC_007605.1 + 38510 0.7 0.578226
Target:  5'- -cCUGGCCCUuucggcCUCCCGCUcUGCc -3'
miRNA:   3'- gaGACCGGGGuau---GAGGGCGGuACGc -5'
33606 5' -59.2 NC_007605.1 + 48602 0.67 0.726581
Target:  5'- gUCUGGCCCgGauuaccCUCCCuugGCCGUGUu -3'
miRNA:   3'- gAGACCGGGgUau----GAGGG---CGGUACGc -5'
33606 5' -59.2 NC_007605.1 + 48751 0.66 0.782583
Target:  5'- -cCUGGaCCCUAaccUGCUCCC-CCcgGUGg -3'
miRNA:   3'- gaGACC-GGGGU---AUGAGGGcGGuaCGC- -5'
33606 5' -59.2 NC_007605.1 + 49323 0.74 0.339688
Target:  5'- -gCUGGCCCCGaa-UCCCGCCGacaaGCGg -3'
miRNA:   3'- gaGACCGGGGUaugAGGGCGGUa---CGC- -5'
33606 5' -59.2 NC_007605.1 + 56252 0.69 0.614966
Target:  5'- ---gGGCCCCAUACUCUaucgcugucaacagCGCCAaaaaGCGg -3'
miRNA:   3'- gagaCCGGGGUAUGAGG--------------GCGGUa---CGC- -5'
33606 5' -59.2 NC_007605.1 + 58677 0.66 0.817465
Target:  5'- -aCUGGgccaCCCCGUugUaaCUGCCGUGCa -3'
miRNA:   3'- gaGACC----GGGGUAugAg-GGCGGUACGc -5'
33606 5' -59.2 NC_007605.1 + 59301 0.73 0.419792
Target:  5'- ---aGGCCCgGaGCUCCgGCCGUGUGg -3'
miRNA:   3'- gagaCCGGGgUaUGAGGgCGGUACGC- -5'
33606 5' -59.2 NC_007605.1 + 63642 0.67 0.716926
Target:  5'- -gCUgGGCCugcagCCGUGC-CCCGCCgAUGCGc -3'
miRNA:   3'- gaGA-CCGG-----GGUAUGaGGGCGG-UACGC- -5'
33606 5' -59.2 NC_007605.1 + 67672 0.66 0.791516
Target:  5'- ---aGGCCCCcgGCUggCCGCCGUGg- -3'
miRNA:   3'- gagaCCGGGGuaUGAg-GGCGGUACgc -5'
33606 5' -59.2 NC_007605.1 + 70312 0.68 0.677704
Target:  5'- uCUCUGGCCCCGccuuugaGgUCCUGagagaCAUGCa -3'
miRNA:   3'- -GAGACCGGGGUa------UgAGGGCg----GUACGc -5'
33606 5' -59.2 NC_007605.1 + 73314 0.66 0.782583
Target:  5'- -aCUGGCCCCGgcaggugGCcuggCCgGCCAaGCa -3'
miRNA:   3'- gaGACCGGGGUa------UGa---GGgCGGUaCGc -5'
33606 5' -59.2 NC_007605.1 + 81477 0.66 0.808965
Target:  5'- -gCUGGgCCUAUugUCCgGCCcUGgGa -3'
miRNA:   3'- gaGACCgGGGUAugAGGgCGGuACgC- -5'
33606 5' -59.2 NC_007605.1 + 89516 0.76 0.284004
Target:  5'- uCUUUGuCCCCAUACUCCUGCUcgGCc -3'
miRNA:   3'- -GAGACcGGGGUAUGAGGGCGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 94900 0.67 0.754111
Target:  5'- cCUCcGGCCCCA---UCCCGCgagccccagcagaCAUGCu -3'
miRNA:   3'- -GAGaCCGGGGUaugAGGGCG-------------GUACGc -5'
33606 5' -59.2 NC_007605.1 + 101842 0.68 0.667789
Target:  5'- cCUCUGGCgCCCucgGCUCCUcgGCCAUu-- -3'
miRNA:   3'- -GAGACCG-GGGua-UGAGGG--CGGUAcgc -5'
33606 5' -59.2 NC_007605.1 + 107223 0.7 0.58812
Target:  5'- uUCUGGCCUCAguucUACacgCCUGCgCAUGUGu -3'
miRNA:   3'- gAGACCGGGGU----AUGa--GGGCG-GUACGC- -5'
33606 5' -59.2 NC_007605.1 + 108877 0.66 0.817465
Target:  5'- gUCUGGggacgaCCCC--GCUgCCCGCC-UGCGc -3'
miRNA:   3'- gAGACC------GGGGuaUGA-GGGCGGuACGC- -5'
33606 5' -59.2 NC_007605.1 + 109314 0.66 0.790629
Target:  5'- aUCUGGCCCgGUGggacgccUUCCCGCgGgagggGCu -3'
miRNA:   3'- gAGACCGGGgUAU-------GAGGGCGgUa----CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.