miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33606 5' -59.2 NC_007605.1 + 113478 0.66 0.791516
Target:  5'- cCUCUgcGGCCCCGgccucUGCggcCCCGgCCucUGCGg -3'
miRNA:   3'- -GAGA--CCGGGGU-----AUGa--GGGC-GGu-ACGC- -5'
33606 5' -59.2 NC_007605.1 + 113070 0.66 0.800313
Target:  5'- ---cGGCCCCGggcACcCCCGcCCAUGUc -3'
miRNA:   3'- gagaCCGGGGUa--UGaGGGC-GGUACGc -5'
33606 5' -59.2 NC_007605.1 + 138634 0.66 0.808965
Target:  5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3'
miRNA:   3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 144771 0.66 0.808965
Target:  5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3'
miRNA:   3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 147840 0.66 0.808965
Target:  5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3'
miRNA:   3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 150909 0.66 0.808965
Target:  5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3'
miRNA:   3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 153978 0.66 0.808965
Target:  5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3'
miRNA:   3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 157047 0.66 0.808965
Target:  5'- cCUCUGGCCCgAUACcggggggCCCggGCCggGUu -3'
miRNA:   3'- -GAGACCGGGgUAUGa------GGG--CGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 109314 0.66 0.790629
Target:  5'- aUCUGGCCCgGUGggacgccUUCCCGCgGgagggGCu -3'
miRNA:   3'- gAGACCGGGgUAU-------GAGGGCGgUa----CGc -5'
33606 5' -59.2 NC_007605.1 + 48751 0.66 0.782583
Target:  5'- -cCUGGaCCCUAaccUGCUCCC-CCcgGUGg -3'
miRNA:   3'- gaGACC-GGGGU---AUGAGGGcGGuaCGC- -5'
33606 5' -59.2 NC_007605.1 + 49323 0.74 0.339688
Target:  5'- -gCUGGCCCCGaa-UCCCGCCGacaaGCGg -3'
miRNA:   3'- gaGACCGGGGUaugAGGGCGGUa---CGC- -5'
33606 5' -59.2 NC_007605.1 + 59301 0.73 0.419792
Target:  5'- ---aGGCCCgGaGCUCCgGCCGUGUGg -3'
miRNA:   3'- gagaCCGGGgUaUGAGGgCGGUACGC- -5'
33606 5' -59.2 NC_007605.1 + 115881 0.7 0.542955
Target:  5'- cCUC-GGCCCCAggcgcccccaucuCUCCCGCCucucccucUGCGa -3'
miRNA:   3'- -GAGaCCGGGGUau-----------GAGGGCGGu-------ACGC- -5'
33606 5' -59.2 NC_007605.1 + 38510 0.7 0.578226
Target:  5'- -cCUGGCCCUuucggcCUCCCGCUcUGCc -3'
miRNA:   3'- gaGACCGGGGuau---GAGGGCGGuACGc -5'
33606 5' -59.2 NC_007605.1 + 109976 0.69 0.627932
Target:  5'- cCUCUGuGCCCCGggugUCCCGCUc-GCGg -3'
miRNA:   3'- -GAGAC-CGGGGUaug-AGGGCGGuaCGC- -5'
33606 5' -59.2 NC_007605.1 + 141703 0.68 0.667789
Target:  5'- cCUCUGGCCCgAUACggggggCCCggGCCggGUu -3'
miRNA:   3'- -GAGACCGGGgUAUGa-----GGG--CGGuaCGc -5'
33606 5' -59.2 NC_007605.1 + 70312 0.68 0.677704
Target:  5'- uCUCUGGCCCCGccuuugaGgUCCUGagagaCAUGCa -3'
miRNA:   3'- -GAGACCGGGGUa------UgAGGGCg----GUACGc -5'
33606 5' -59.2 NC_007605.1 + 166641 0.68 0.677704
Target:  5'- -cCUGGCCCCAUgaACUCCU-CCGaugGCa -3'
miRNA:   3'- gaGACCGGGGUA--UGAGGGcGGUa--CGc -5'
33606 5' -59.2 NC_007605.1 + 117085 0.66 0.773521
Target:  5'- cCUCUGGCCagaCuggACgcuuggCCCGCCAcccccGCGg -3'
miRNA:   3'- -GAGACCGGg--Gua-UGa-----GGGCGGUa----CGC- -5'
33606 5' -59.2 NC_007605.1 + 108877 0.66 0.817465
Target:  5'- gUCUGGggacgaCCCC--GCUgCCCGCC-UGCGc -3'
miRNA:   3'- gAGACC------GGGGuaUGA-GGGCGGuACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.