miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33607 3' -62.1 NC_007605.1 + 169761 0.66 0.696594
Target:  5'- -gGGUCUAgGCcgaGCGCGGaGCGUGGguCa -3'
miRNA:   3'- cgCCAGGUgUG---CGCGCC-CGCGUCguG- -5'
33607 3' -62.1 NC_007605.1 + 158632 0.66 0.695634
Target:  5'- uGgGGUCUgcgcaccgagacgGCACGCcaggGCGGcuaGCAGCACg -3'
miRNA:   3'- -CgCCAGG-------------UGUGCG----CGCCcg-CGUCGUG- -5'
33607 3' -62.1 NC_007605.1 + 51740 0.66 0.68697
Target:  5'- cGUGGUCCACGagcgGCGUGucuuGGC-CAGCGg -3'
miRNA:   3'- -CGCCAGGUGUg---CGCGC----CCGcGUCGUg -5'
33607 3' -62.1 NC_007605.1 + 12304 0.66 0.68697
Target:  5'- cGUGGUCUACugGgaGCuGGCccGCAuGCGCa -3'
miRNA:   3'- -CGCCAGGUGugCg-CGcCCG--CGU-CGUG- -5'
33607 3' -62.1 NC_007605.1 + 46097 0.66 0.68697
Target:  5'- -aGGUCCcuaggaaGCGaCGCGGGaccaCGCGGCAg -3'
miRNA:   3'- cgCCAGGug-----UGC-GCGCCC----GCGUCGUg -5'
33607 3' -62.1 NC_007605.1 + 52882 0.66 0.68697
Target:  5'- gGCGG-CgGCGCuGgGCGGGCGgaAGCuACa -3'
miRNA:   3'- -CGCCaGgUGUG-CgCGCCCGCg-UCG-UG- -5'
33607 3' -62.1 NC_007605.1 + 39926 0.66 0.68697
Target:  5'- cGUGGUCCGCuuGCucuGCuGGCcCGGUACg -3'
miRNA:   3'- -CGCCAGGUGugCG---CGcCCGcGUCGUG- -5'
33607 3' -62.1 NC_007605.1 + 133303 0.66 0.667604
Target:  5'- -aGGUCCcccucCACGgGaGGGCGCucuGCGCc -3'
miRNA:   3'- cgCCAGGu----GUGCgCgCCCGCGu--CGUG- -5'
33607 3' -62.1 NC_007605.1 + 115457 0.66 0.667604
Target:  5'- uGCGGcCCuGCACGUGCGcaGGUGUacGGCGg -3'
miRNA:   3'- -CGCCaGG-UGUGCGCGC--CCGCG--UCGUg -5'
33607 3' -62.1 NC_007605.1 + 121389 0.66 0.657878
Target:  5'- uCGGagCCugGCGCGCGGcccgaGguGCGCc -3'
miRNA:   3'- cGCCa-GGugUGCGCGCCcg---CguCGUG- -5'
33607 3' -62.1 NC_007605.1 + 8150 0.66 0.648134
Target:  5'- cGCuGUacaCCggGCugGCGCaGGCGCuGCGCg -3'
miRNA:   3'- -CGcCA---GG--UGugCGCGcCCGCGuCGUG- -5'
33607 3' -62.1 NC_007605.1 + 68105 0.66 0.648134
Target:  5'- cCGGU-CGCGCuCGCGGG-GCAGUAUu -3'
miRNA:   3'- cGCCAgGUGUGcGCGCCCgCGUCGUG- -5'
33607 3' -62.1 NC_007605.1 + 153602 0.66 0.638378
Target:  5'- -aGGUCgaGCACGCGCcGGCaGCGugucuGCACa -3'
miRNA:   3'- cgCCAGg-UGUGCGCGcCCG-CGU-----CGUG- -5'
33607 3' -62.1 NC_007605.1 + 166769 0.67 0.628617
Target:  5'- aUGGcCC-CugGUGCccgGGGCGCAuaGCACg -3'
miRNA:   3'- cGCCaGGuGugCGCG---CCCGCGU--CGUG- -5'
33607 3' -62.1 NC_007605.1 + 66148 0.67 0.618859
Target:  5'- -aGGaagaUGC-CGCGCGGGC-CAGCACg -3'
miRNA:   3'- cgCCag--GUGuGCGCGCCCGcGUCGUG- -5'
33607 3' -62.1 NC_007605.1 + 170086 0.67 0.60911
Target:  5'- aGCGGcgCUACgGCGgGCGGGCgGCGGgGg -3'
miRNA:   3'- -CGCCa-GGUG-UGCgCGCCCG-CGUCgUg -5'
33607 3' -62.1 NC_007605.1 + 170609 0.67 0.60911
Target:  5'- aGCGGcgCUACgGCGgGCGGGCgGCGGgGg -3'
miRNA:   3'- -CGCCa-GGUG-UGCgCGCCCG-CGUCgUg -5'
33607 3' -62.1 NC_007605.1 + 171146 0.67 0.60911
Target:  5'- aGCGGcgCUACgGCGgGCGGGCgGCGGgGg -3'
miRNA:   3'- -CGCCa-GGUG-UGCgCGCCCG-CGUCgUg -5'
33607 3' -62.1 NC_007605.1 + 169549 0.67 0.60911
Target:  5'- aGCGGcgCUACgGCGgGCGGGCgGCGGgGg -3'
miRNA:   3'- -CGCCa-GGUG-UGCgCGCCCG-CGUCgUg -5'
33607 3' -62.1 NC_007605.1 + 99013 0.67 0.599377
Target:  5'- gGCGuGUau-CACGC-CGGGCGguGCAUc -3'
miRNA:   3'- -CGC-CAgguGUGCGcGCCCGCguCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.