miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33607 3' -62.1 NC_007605.1 + 99013 0.67 0.599377
Target:  5'- gGCGuGUau-CACGC-CGGGCGguGCAUc -3'
miRNA:   3'- -CGC-CAgguGUGCGcGCCCGCguCGUG- -5'
33607 3' -62.1 NC_007605.1 + 64389 0.67 0.589665
Target:  5'- aGCgGGUCaCACAUGCGCaGGCGU-GUAg -3'
miRNA:   3'- -CG-CCAG-GUGUGCGCGcCCGCGuCGUg -5'
33607 3' -62.1 NC_007605.1 + 11630 0.67 0.579982
Target:  5'- cGCGGUCC-CGgGCcCGGG-GCGGC-Cg -3'
miRNA:   3'- -CGCCAGGuGUgCGcGCCCgCGUCGuG- -5'
33607 3' -62.1 NC_007605.1 + 39396 0.68 0.570333
Target:  5'- cGgGGuUCCugGCGCucCGGGgGCAGC-Cg -3'
miRNA:   3'- -CgCC-AGGugUGCGc-GCCCgCGUCGuG- -5'
33607 3' -62.1 NC_007605.1 + 39271 0.68 0.570333
Target:  5'- cGgGGuUCCugGCGCucCGGGgGCAGC-Cg -3'
miRNA:   3'- -CgCC-AGGugUGCGc-GCCCgCGUCGuG- -5'
33607 3' -62.1 NC_007605.1 + 38272 0.68 0.570333
Target:  5'- cGgGGuUCCugGCGCucCGGGgGCAGC-Cg -3'
miRNA:   3'- -CgCC-AGGugUGCGc-GCCCgCGUCGuG- -5'
33607 3' -62.1 NC_007605.1 + 38397 0.68 0.570333
Target:  5'- cGgGGuUCCugGCGCucCGGGgGCAGC-Cg -3'
miRNA:   3'- -CgCC-AGGugUGCGc-GCCCgCGUCGuG- -5'
33607 3' -62.1 NC_007605.1 + 38647 0.68 0.570333
Target:  5'- cGgGGuUCCugGCGCucCGGGgGCAGC-Cg -3'
miRNA:   3'- -CgCC-AGGugUGCGc-GCCCgCGUCGuG- -5'
33607 3' -62.1 NC_007605.1 + 38772 0.68 0.570333
Target:  5'- cGgGGuUCCugGCGCucCGGGgGCAGC-Cg -3'
miRNA:   3'- -CgCC-AGGugUGCGc-GCCCgCGUCGuG- -5'
33607 3' -62.1 NC_007605.1 + 39021 0.68 0.570333
Target:  5'- cGgGGuUCCugGCGCucCGGGgGCAGC-Cg -3'
miRNA:   3'- -CgCC-AGGugUGCGc-GCCCgCGUCGuG- -5'
33607 3' -62.1 NC_007605.1 + 39521 0.68 0.570333
Target:  5'- cGgGGuUCCugGCGCucCGGGgGCAGC-Cg -3'
miRNA:   3'- -CgCC-AGGugUGCGc-GCCCgCGUCGuG- -5'
33607 3' -62.1 NC_007605.1 + 39646 0.68 0.570333
Target:  5'- cGgGGuUCCugGCGCucCGGGgGCAGC-Cg -3'
miRNA:   3'- -CgCC-AGGugUGCGc-GCCCgCGUCGuG- -5'
33607 3' -62.1 NC_007605.1 + 38522 0.68 0.570333
Target:  5'- cGgGGuUCCugGCGCucCGGGgGCAGC-Cg -3'
miRNA:   3'- -CgCC-AGGugUGCGc-GCCCgCGUCGuG- -5'
33607 3' -62.1 NC_007605.1 + 39146 0.68 0.570333
Target:  5'- cGgGGuUCCugGCGCucCGGGgGCAGC-Cg -3'
miRNA:   3'- -CgCC-AGGugUGCGc-GCCCgCGUCGuG- -5'
33607 3' -62.1 NC_007605.1 + 36523 0.68 0.560724
Target:  5'- gGCcGUCUguGCAugUGUGUGGGCGCAGCu- -3'
miRNA:   3'- -CGcCAGG--UGU--GCGCGCCCGCGUCGug -5'
33607 3' -62.1 NC_007605.1 + 169642 0.68 0.541645
Target:  5'- gGgGGUCgGgGgGCGCcgccGGGCGCAGC-Ca -3'
miRNA:   3'- -CgCCAGgUgUgCGCG----CCCGCGUCGuG- -5'
33607 3' -62.1 NC_007605.1 + 112732 0.69 0.513453
Target:  5'- -aGGUCCugGaCGaGgGGGCGCGGCu- -3'
miRNA:   3'- cgCCAGGugU-GCgCgCCCGCGUCGug -5'
33607 3' -62.1 NC_007605.1 + 35079 0.69 0.513453
Target:  5'- -gGGUCCcCGCcCGCGGGCcCGGCGu -3'
miRNA:   3'- cgCCAGGuGUGcGCGCCCGcGUCGUg -5'
33607 3' -62.1 NC_007605.1 + 97415 0.69 0.494996
Target:  5'- cGCGGaccgucuaUCCACcuaccuagauCGCGCGGGgGCccuGCGCu -3'
miRNA:   3'- -CGCC--------AGGUGu---------GCGCGCCCgCGu--CGUG- -5'
33607 3' -62.1 NC_007605.1 + 372 0.69 0.485881
Target:  5'- aCGGUCaCGCAuggcUGCGCccGCGCGGCGCc -3'
miRNA:   3'- cGCCAG-GUGU----GCGCGccCGCGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.