miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33607 5' -52 NC_007605.1 + 118905 0.66 0.992208
Target:  5'- cGCACGCCagucucaucGCCUCUaGGAAUc---ACCc -3'
miRNA:   3'- -CGUGCGG---------CGGAGGaCCUUAcauuUGG- -5'
33607 5' -52 NC_007605.1 + 17665 0.66 0.992208
Target:  5'- aGCGgGCCaagGCCUUCgUGGAGgcccUGAGCCc -3'
miRNA:   3'- -CGUgCGG---CGGAGG-ACCUUac--AUUUGG- -5'
33607 5' -52 NC_007605.1 + 25034 0.66 0.992208
Target:  5'- cCGCGCCuggcGCCUCCUcGGGGcc--AGCCg -3'
miRNA:   3'- cGUGCGG----CGGAGGA-CCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 15828 0.66 0.992208
Target:  5'- cCGCGCCuggcGCCUCCUcGGGGcc--AGCCg -3'
miRNA:   3'- cGUGCGG----CGGAGGA-CCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 12759 0.66 0.992208
Target:  5'- cCGCGCCuggcGCCUCCUcGGGGcc--AGCCg -3'
miRNA:   3'- cGUGCGG----CGGAGGA-CCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 31172 0.66 0.992208
Target:  5'- cCGCGCCuggcGCCUCCUcGGGGcc--AGCCg -3'
miRNA:   3'- cGUGCGG----CGGAGGA-CCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 128245 0.66 0.992208
Target:  5'- aGCACGguaGCCUugggggCCUGGAcUGUGGuauCCa -3'
miRNA:   3'- -CGUGCgg-CGGA------GGACCUuACAUUu--GG- -5'
33607 5' -52 NC_007605.1 + 34241 0.66 0.992208
Target:  5'- cCGCGCCuggcGCCUCCUcGGGGcc--AGCCg -3'
miRNA:   3'- cGUGCGG----CGGAGGA-CCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 28103 0.66 0.992208
Target:  5'- cCGCGCCuggcGCCUCCUcGGGGcc--AGCCg -3'
miRNA:   3'- cGUGCGG----CGGAGGA-CCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 21965 0.66 0.992208
Target:  5'- cCGCGCCuggcGCCUCCUcGGGGcc--AGCCg -3'
miRNA:   3'- cGUGCGG----CGGAGGA-CCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 18897 0.66 0.992208
Target:  5'- cCGCGCCuggcGCCUCCUcGGGGcc--AGCCg -3'
miRNA:   3'- cGUGCGG----CGGAGGA-CCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 83257 0.66 0.992208
Target:  5'- --uCGCCaGCCUagaUUUGuGGAUGUGAACCc -3'
miRNA:   3'- cguGCGG-CGGA---GGAC-CUUACAUUUGG- -5'
33607 5' -52 NC_007605.1 + 41166 0.66 0.992208
Target:  5'- uGCuCGCCaCUUCCUGGGucau-GACCu -3'
miRNA:   3'- -CGuGCGGcGGAGGACCUuacauUUGG- -5'
33607 5' -52 NC_007605.1 + 42367 0.66 0.992208
Target:  5'- uGCAUGCaUGCCUgCaGGAcauuGUGUuguAACCa -3'
miRNA:   3'- -CGUGCG-GCGGAgGaCCU----UACAu--UUGG- -5'
33607 5' -52 NC_007605.1 + 50248 0.66 0.992208
Target:  5'- cGCGCGCCaGgCUCCgagccGGAAUGcauuggGGGCa -3'
miRNA:   3'- -CGUGCGG-CgGAGGa----CCUUACa-----UUUGg -5'
33607 5' -52 NC_007605.1 + 143982 0.66 0.992208
Target:  5'- uGCuCGCCaCUUCCUGGGucau-GACCu -3'
miRNA:   3'- -CGuGCGGcGGAGGACCUuacauUUGG- -5'
33607 5' -52 NC_007605.1 + 7265 0.66 0.992208
Target:  5'- -aGCGCCGCCUUcgugCUGGGGgcaaucGCCc -3'
miRNA:   3'- cgUGCGGCGGAG----GACCUUacauu-UGG- -5'
33607 5' -52 NC_007605.1 + 156499 0.66 0.991546
Target:  5'- aGCAUGCCGCCgaagGGGuuuuugaagaaggagAUG-AAACCa -3'
miRNA:   3'- -CGUGCGGCGGaggaCCU---------------UACaUUUGG- -5'
33607 5' -52 NC_007605.1 + 63019 0.66 0.99108
Target:  5'- aGCACcgcgGCUGgCUCCUGGAAagcGUAcGCa -3'
miRNA:   3'- -CGUG----CGGCgGAGGACCUUa--CAUuUGg -5'
33607 5' -52 NC_007605.1 + 52290 0.66 0.99108
Target:  5'- cGCGgGCCGUacUUUGGu-UGUGGACCa -3'
miRNA:   3'- -CGUgCGGCGgaGGACCuuACAUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.