miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33607 5' -52 NC_007605.1 + 115824 0.66 0.990961
Target:  5'- aGCGCcuCCGCaccaUCCUGGAcgacaucgaggcaAUGUuGGGCCu -3'
miRNA:   3'- -CGUGc-GGCGg---AGGACCU-------------UACA-UUUGG- -5'
33607 5' -52 NC_007605.1 + 51972 0.66 0.990345
Target:  5'- cCACgGCCGCCUCaaaaacggagacgGGGAUGgugucaccgGAGCCc -3'
miRNA:   3'- cGUG-CGGCGGAGga-----------CCUUACa--------UUUGG- -5'
33607 5' -52 NC_007605.1 + 168899 0.66 0.989828
Target:  5'- gGCAUucaGCCGCCgcCCUGGucUGaaAGGCCu -3'
miRNA:   3'- -CGUG---CGGCGGa-GGACCuuACa-UUUGG- -5'
33607 5' -52 NC_007605.1 + 144379 0.66 0.989828
Target:  5'- uGCAUGUCuacuuGCCUCCUGuGGUGgcaGAGCUu -3'
miRNA:   3'- -CGUGCGG-----CGGAGGACcUUACa--UUUGG- -5'
33607 5' -52 NC_007605.1 + 158908 0.66 0.988443
Target:  5'- gGCugGCCGagacCCgggUCUGGGGggccuguggugGUGAGCCu -3'
miRNA:   3'- -CGugCGGC----GGa--GGACCUUa----------CAUUUGG- -5'
33607 5' -52 NC_007605.1 + 164966 0.66 0.988443
Target:  5'- uCACcCUGaCCUCCuacUGGAGgaggGUGAGCCu -3'
miRNA:   3'- cGUGcGGC-GGAGG---ACCUUa---CAUUUGG- -5'
33607 5' -52 NC_007605.1 + 118631 0.66 0.988443
Target:  5'- -aGCGCCuGCCUugucUCUGGcGUGU--GCCa -3'
miRNA:   3'- cgUGCGG-CGGA----GGACCuUACAuuUGG- -5'
33607 5' -52 NC_007605.1 + 132406 0.66 0.988443
Target:  5'- gGCGgGCCgGCCuccuuUCCUGGAAauccAGCCa -3'
miRNA:   3'- -CGUgCGG-CGG-----AGGACCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 155839 0.66 0.988443
Target:  5'- gGCugGCCGagacCCgggUCUGGGGggccuguggugGUGAGCCu -3'
miRNA:   3'- -CGugCGGC----GGa--GGACCUUa----------CAUUUGG- -5'
33607 5' -52 NC_007605.1 + 146633 0.66 0.988443
Target:  5'- gGCugGCCGagacCCgggUCUGGGGggccuguggugGUGAGCCu -3'
miRNA:   3'- -CGugCGGC----GGa--GGACCUUa----------CAUUUGG- -5'
33607 5' -52 NC_007605.1 + 140495 0.66 0.988443
Target:  5'- gGCugGCCGagacCCgggUCUGGGGggccuguggugGUGAGCCu -3'
miRNA:   3'- -CGugCGGC----GGa--GGACCUUa----------CAUUUGG- -5'
33607 5' -52 NC_007605.1 + 137426 0.66 0.988443
Target:  5'- gGCugGCCGagacCCgggUCUGGGGggccuguggugGUGAGCCu -3'
miRNA:   3'- -CGugCGGC----GGa--GGACCUUa----------CAUUUGG- -5'
33607 5' -52 NC_007605.1 + 76002 0.66 0.988443
Target:  5'- uGC-CGCCggaGCCUUCUGGuccaGAUGUGucuCCc -3'
miRNA:   3'- -CGuGCGG---CGGAGGACC----UUACAUuu-GG- -5'
33607 5' -52 NC_007605.1 + 152770 0.66 0.988443
Target:  5'- gGCugGCCGagacCCgggUCUGGGGggccuguggugGUGAGCCu -3'
miRNA:   3'- -CGugCGGC----GGa--GGACCUUa----------CAUUUGG- -5'
33607 5' -52 NC_007605.1 + 149701 0.66 0.988443
Target:  5'- gGCugGCCGagacCCgggUCUGGGGggccuguggugGUGAGCCu -3'
miRNA:   3'- -CGugCGGC----GGa--GGACCUUa----------CAUUUGG- -5'
33607 5' -52 NC_007605.1 + 11013 0.66 0.988443
Target:  5'- cGCaACGCCgGCCUgCUGGccgagcUGgaGGCCa -3'
miRNA:   3'- -CG-UGCGG-CGGAgGACCuu----ACauUUGG- -5'
33607 5' -52 NC_007605.1 + 143564 0.66 0.988443
Target:  5'- gGCugGCCGagacCCgggUCUGGGGggccuguggugGUGAGCCu -3'
miRNA:   3'- -CGugCGGC----GGa--GGACCUUa----------CAUUUGG- -5'
33607 5' -52 NC_007605.1 + 37118 0.66 0.988443
Target:  5'- uGCGCGCCGCCagC----AUGgcAGCCg -3'
miRNA:   3'- -CGUGCGGCGGagGaccuUACauUUGG- -5'
33607 5' -52 NC_007605.1 + 11081 0.67 0.985237
Target:  5'- uGCAUGCagCGCCcugucCCUGGAGcugGUGcACCu -3'
miRNA:   3'- -CGUGCG--GCGGa----GGACCUUa--CAUuUGG- -5'
33607 5' -52 NC_007605.1 + 115532 0.67 0.983399
Target:  5'- uGCAUaGCCGCagcagaCUCCUGGAccccagAGGCCu -3'
miRNA:   3'- -CGUG-CGGCG------GAGGACCUuaca--UUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.