miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33607 5' -52 NC_007605.1 + 50504 0.7 0.909021
Target:  5'- gGCGCGgUGCCaaugcaccaaCUGGggUGUGcGCCg -3'
miRNA:   3'- -CGUGCgGCGGag--------GACCuuACAUuUGG- -5'
33607 5' -52 NC_007605.1 + 39119 0.72 0.852304
Target:  5'- uGCGcCGCCGCCaggUCCUGGGGc---AGCCg -3'
miRNA:   3'- -CGU-GCGGCGG---AGGACCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 39244 0.72 0.852304
Target:  5'- uGCGcCGCCGCCaggUCCUGGGGc---AGCCg -3'
miRNA:   3'- -CGU-GCGGCGG---AGGACCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 39369 0.72 0.852304
Target:  5'- uGCGcCGCCGCCaggUCCUGGGGc---AGCCg -3'
miRNA:   3'- -CGU-GCGGCGG---AGGACCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 39494 0.72 0.852304
Target:  5'- uGCGcCGCCGCCaggUCCUGGGGc---AGCCg -3'
miRNA:   3'- -CGU-GCGGCGG---AGGACCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 39619 0.72 0.852304
Target:  5'- uGCGcCGCCGCCaggUCCUGGGGc---AGCCg -3'
miRNA:   3'- -CGU-GCGGCGG---AGGACCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 39744 0.72 0.852304
Target:  5'- uGCGcCGCCGCCaggUCCUGGGGc---AGCCg -3'
miRNA:   3'- -CGU-GCGGCGG---AGGACCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 44809 0.71 0.882487
Target:  5'- -aGCGCUGCCUuaaaggCCUGGAAgcuggguggGUAAAUCu -3'
miRNA:   3'- cgUGCGGCGGA------GGACCUUa--------CAUUUGG- -5'
33607 5' -52 NC_007605.1 + 153564 0.71 0.896228
Target:  5'- gGCugGCCGCCUCCUuuacccGGGcaucc-GCCa -3'
miRNA:   3'- -CGugCGGCGGAGGA------CCUuacauuUGG- -5'
33607 5' -52 NC_007605.1 + 38994 0.72 0.852304
Target:  5'- uGCGcCGCCGCCaggUCCUGGGGc---AGCCg -3'
miRNA:   3'- -CGU-GCGGCGG---AGGACCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 38870 0.72 0.852304
Target:  5'- uGCGcCGCCGCCaggUCCUGGGGc---AGCCg -3'
miRNA:   3'- -CGU-GCGGCGG---AGGACCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 38745 0.72 0.852304
Target:  5'- uGCGcCGCCGCCaggUCCUGGGGc---AGCCg -3'
miRNA:   3'- -CGU-GCGGCGG---AGGACCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 154549 0.78 0.559615
Target:  5'- aGCAC-CCGCCUgCagGGGAUGUGAGCg -3'
miRNA:   3'- -CGUGcGGCGGAgGa-CCUUACAUUUGg -5'
33607 5' -52 NC_007605.1 + 125535 0.77 0.611092
Target:  5'- cCGCGUCGCUUCCUaGGGAccUGUAAGCg -3'
miRNA:   3'- cGUGCGGCGGAGGA-CCUU--ACAUUUGg -5'
33607 5' -52 NC_007605.1 + 168938 0.76 0.631849
Target:  5'- -aACGCgUGUUUCUUGGGAUGUAGGCCc -3'
miRNA:   3'- cgUGCG-GCGGAGGACCUUACAUUUGG- -5'
33607 5' -52 NC_007605.1 + 159683 0.75 0.734236
Target:  5'- cCGCGUCGCC-CgaGGAGcUGUAGACCc -3'
miRNA:   3'- cGUGCGGCGGaGgaCCUU-ACAUUUGG- -5'
33607 5' -52 NC_007605.1 + 129117 0.74 0.753922
Target:  5'- -aGCGuuGCCUCCUGGG----GGGCCa -3'
miRNA:   3'- cgUGCggCGGAGGACCUuacaUUUGG- -5'
33607 5' -52 NC_007605.1 + 38370 0.72 0.852304
Target:  5'- uGCGcCGCCGCCaggUCCUGGGGc---AGCCg -3'
miRNA:   3'- -CGU-GCGGCGG---AGGACCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 38495 0.72 0.852304
Target:  5'- uGCGcCGCCGCCaggUCCUGGGGc---AGCCg -3'
miRNA:   3'- -CGU-GCGGCGG---AGGACCUUacauUUGG- -5'
33607 5' -52 NC_007605.1 + 38620 0.72 0.852304
Target:  5'- uGCGcCGCCGCCaggUCCUGGGGc---AGCCg -3'
miRNA:   3'- -CGU-GCGGCGG---AGGACCUUacauUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.