miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33608 3' -57.1 NC_007605.1 + 83929 0.66 0.883147
Target:  5'- gGAGGC-GCGgCUCGUuuuuGACGUcGGCCuGa -3'
miRNA:   3'- -CUCCGaCGCaGAGCA----CUGUA-CCGGuC- -5'
33608 3' -57.1 NC_007605.1 + 60272 0.66 0.883147
Target:  5'- uGAGGgUGgcCGUgUCG-GcCGUGGCCAGg -3'
miRNA:   3'- -CUCCgAC--GCAgAGCaCuGUACCGGUC- -5'
33608 3' -57.1 NC_007605.1 + 2302 0.66 0.868854
Target:  5'- cGGGCUuccagaggGCccuUCUgGUGGCcgGGCCAGa -3'
miRNA:   3'- cUCCGA--------CGc--AGAgCACUGuaCCGGUC- -5'
33608 3' -57.1 NC_007605.1 + 153907 0.66 0.86139
Target:  5'- aGGGGCgcccagGCGUC-CGggGAgGgGGCCAGg -3'
miRNA:   3'- -CUCCGa-----CGCAGaGCa-CUgUaCCGGUC- -5'
33608 3' -57.1 NC_007605.1 + 20817 0.68 0.794901
Target:  5'- cGAGGCgGCGUCcgCGggccgagggGAUGUGGCCc- -3'
miRNA:   3'- -CUCCGaCGCAGa-GCa--------CUGUACCGGuc -5'
33608 3' -57.1 NC_007605.1 + 123847 0.69 0.699365
Target:  5'- aGGGGCUG-GUCU-GUGACcUGGCcCAGc -3'
miRNA:   3'- -CUCCGACgCAGAgCACUGuACCG-GUC- -5'
33608 3' -57.1 NC_007605.1 + 84300 0.7 0.648942
Target:  5'- -uGGgUGCGUCUUG-GGCGUgGGCCAa -3'
miRNA:   3'- cuCCgACGCAGAGCaCUGUA-CCGGUc -5'
33608 3' -57.1 NC_007605.1 + 163252 0.71 0.618463
Target:  5'- uGAGGCUGgccgggGUCUCGUGcgaggccuccaGCAUGGCgGGu -3'
miRNA:   3'- -CUCCGACg-----CAGAGCAC-----------UGUACCGgUC- -5'
33608 3' -57.1 NC_007605.1 + 20221 0.73 0.48879
Target:  5'- -cGGCUGCccGUCUCGgccuacgaggcccUGGcCGUGGCCAGg -3'
miRNA:   3'- cuCCGACG--CAGAGC-------------ACU-GUACCGGUC- -5'
33608 3' -57.1 NC_007605.1 + 60003 0.73 0.480298
Target:  5'- uGGGCggGCGUCUCGccgGACuAUGGCCu- -3'
miRNA:   3'- cUCCGa-CGCAGAGCa--CUG-UACCGGuc -5'
33608 3' -57.1 NC_007605.1 + 150704 1.09 0.002398
Target:  5'- gGAGGCUGCGUCUCGUGACAUGGCCAGg -3'
miRNA:   3'- -CUCCGACGCAGAGCACUGUACCGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.