miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33608 5' -60.6 NC_007605.1 + 71376 0.66 0.788831
Target:  5'- uGGCgGAgCUugGUgCUGUGcCCCuGCCc -3'
miRNA:   3'- -UCGgCU-GGugCAgGGCACaGGGuCGG- -5'
33608 5' -60.6 NC_007605.1 + 161518 0.66 0.788831
Target:  5'- uGCCGAcuCCAcCGcCCgCGUG-CCCAGUa -3'
miRNA:   3'- uCGGCU--GGU-GCaGG-GCACaGGGUCGg -5'
33608 5' -60.6 NC_007605.1 + 168865 0.66 0.788831
Target:  5'- aAGCCGGCCACGaccggcacCCCGcuuuuggcaUGgcaUUCAGCCg -3'
miRNA:   3'- -UCGGCUGGUGCa-------GGGC---------ACa--GGGUCGG- -5'
33608 5' -60.6 NC_007605.1 + 51430 0.66 0.788831
Target:  5'- cGCUGACCA-GU-CCGUGcCCCAcCCu -3'
miRNA:   3'- uCGGCUGGUgCAgGGCACaGGGUcGG- -5'
33608 5' -60.6 NC_007605.1 + 161570 0.66 0.787959
Target:  5'- -aCCGACUGCGUCCuCGgcaccaGUCCCugaaucaGGCUg -3'
miRNA:   3'- ucGGCUGGUGCAGG-GCa-----CAGGG-------UCGG- -5'
33608 5' -60.6 NC_007605.1 + 4465 0.66 0.780055
Target:  5'- -uCCGACUACcUCCCGgagaUGUuugcagagcacCCCGGCCu -3'
miRNA:   3'- ucGGCUGGUGcAGGGC----ACA-----------GGGUCGG- -5'
33608 5' -60.6 NC_007605.1 + 18884 0.66 0.780055
Target:  5'- gAGCCGACCG-GcCCCGcG-CCUGGCg -3'
miRNA:   3'- -UCGGCUGGUgCaGGGCaCaGGGUCGg -5'
33608 5' -60.6 NC_007605.1 + 34228 0.66 0.780055
Target:  5'- gAGCCGACCG-GcCCCGcG-CCUGGCg -3'
miRNA:   3'- -UCGGCUGGUgCaGGGCaCaGGGUCGg -5'
33608 5' -60.6 NC_007605.1 + 107734 0.66 0.780055
Target:  5'- gGGCacuGACUAUGUCCC-UGUCUCGGagaCg -3'
miRNA:   3'- -UCGg--CUGGUGCAGGGcACAGGGUCg--G- -5'
33608 5' -60.6 NC_007605.1 + 15815 0.66 0.780055
Target:  5'- gAGCCGACCG-GcCCCGcG-CCUGGCg -3'
miRNA:   3'- -UCGGCUGGUgCaGGGCaCaGGGUCGg -5'
33608 5' -60.6 NC_007605.1 + 25021 0.66 0.780055
Target:  5'- gAGCCGACCG-GcCCCGcG-CCUGGCg -3'
miRNA:   3'- -UCGGCUGGUgCaGGGCaCaGGGUCGg -5'
33608 5' -60.6 NC_007605.1 + 31159 0.66 0.780055
Target:  5'- gAGCCGACCG-GcCCCGcG-CCUGGCg -3'
miRNA:   3'- -UCGGCUGGUgCaGGGCaCaGGGUCGg -5'
33608 5' -60.6 NC_007605.1 + 129798 0.66 0.780055
Target:  5'- --aCGGCCGC-UCCCucagGUGUCCacaGGCCc -3'
miRNA:   3'- ucgGCUGGUGcAGGG----CACAGGg--UCGG- -5'
33608 5' -60.6 NC_007605.1 + 28090 0.66 0.780055
Target:  5'- gAGCCGACCG-GcCCCGcG-CCUGGCg -3'
miRNA:   3'- -UCGGCUGGUgCaGGGCaCaGGGUCGg -5'
33608 5' -60.6 NC_007605.1 + 12746 0.66 0.780055
Target:  5'- gAGCCGACCG-GcCCCGcG-CCUGGCg -3'
miRNA:   3'- -UCGGCUGGUgCaGGGCaCaGGGUCGg -5'
33608 5' -60.6 NC_007605.1 + 28911 0.66 0.772053
Target:  5'- cAGCCGGCCACccCCCGccggagcggggcagcGaCCCAGCg -3'
miRNA:   3'- -UCGGCUGGUGcaGGGCa--------------CaGGGUCGg -5'
33608 5' -60.6 NC_007605.1 + 92913 0.66 0.771158
Target:  5'- gGGUCGACUGCGaccUCCCa---CCUAGCCa -3'
miRNA:   3'- -UCGGCUGGUGC---AGGGcacaGGGUCGG- -5'
33608 5' -60.6 NC_007605.1 + 110695 0.66 0.771158
Target:  5'- gAGCUGACC-CGggCCCGccGUCCUcucgAGCUc -3'
miRNA:   3'- -UCGGCUGGuGCa-GGGCa-CAGGG----UCGG- -5'
33608 5' -60.6 NC_007605.1 + 45537 0.66 0.771158
Target:  5'- gGGCC-ACCA-GUCuCCGggccggGUCCgGGCCc -3'
miRNA:   3'- -UCGGcUGGUgCAG-GGCa-----CAGGgUCGG- -5'
33608 5' -60.6 NC_007605.1 + 106573 0.66 0.762149
Target:  5'- -cCCGcCCACaaaacuugCCCGcUGUCaCCAGCCg -3'
miRNA:   3'- ucGGCuGGUGca------GGGC-ACAG-GGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.