miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33608 5' -60.6 NC_007605.1 + 249 0.71 0.494996
Target:  5'- gGGCgCGACCGCcUCUC-UGUCCCcGCCc -3'
miRNA:   3'- -UCG-GCUGGUGcAGGGcACAGGGuCGG- -5'
33608 5' -60.6 NC_007605.1 + 787 0.71 0.494996
Target:  5'- gGGCgCGACCGCcUCUC-UGUCCCcGCCc -3'
miRNA:   3'- -UCG-GCUGGUGcAGGGcACAGGGuCGG- -5'
33608 5' -60.6 NC_007605.1 + 1309 0.71 0.494996
Target:  5'- gGGCgCGACCGCcUCUC-UGUCCCcGCCc -3'
miRNA:   3'- -UCG-GCUGGUGcAGGGcACAGGGuCGG- -5'
33608 5' -60.6 NC_007605.1 + 1847 0.71 0.494996
Target:  5'- gGGCgCGACCGCcUCUC-UGUCCCcGCCc -3'
miRNA:   3'- -UCG-GCUGGUGcAGGGcACAGGGuCGG- -5'
33608 5' -60.6 NC_007605.1 + 2210 0.67 0.696594
Target:  5'- aAGCCGGCCcuCcUUCCGUcaGUUCCAGgCCa -3'
miRNA:   3'- -UCGGCUGGu-GcAGGGCA--CAGGGUC-GG- -5'
33608 5' -60.6 NC_007605.1 + 4465 0.66 0.780055
Target:  5'- -uCCGACUACcUCCCGgagaUGUuugcagagcacCCCGGCCu -3'
miRNA:   3'- ucGGCUGGUGcAGGGC----ACA-----------GGGUCGG- -5'
33608 5' -60.6 NC_007605.1 + 6674 0.68 0.628617
Target:  5'- uAGCC-ACC-CGUCCCGgguacaaGUCCCGGgUg -3'
miRNA:   3'- -UCGGcUGGuGCAGGGCa------CAGGGUCgG- -5'
33608 5' -60.6 NC_007605.1 + 12085 0.67 0.699473
Target:  5'- gGGCCGAggcgaggaggagGCGUCCCGggagagcccggaggUGcCCCGGCCg -3'
miRNA:   3'- -UCGGCUgg----------UGCAGGGC--------------ACaGGGUCGG- -5'
33608 5' -60.6 NC_007605.1 + 12746 0.66 0.780055
Target:  5'- gAGCCGACCG-GcCCCGcG-CCUGGCg -3'
miRNA:   3'- -UCGGCUGGUgCaGGGCaCaGGGUCGg -5'
33608 5' -60.6 NC_007605.1 + 13408 0.69 0.60911
Target:  5'- aGGCCGGCCggagggaccccgGCGgCCCGgugucaGUCCCcccugcAGCCg -3'
miRNA:   3'- -UCGGCUGG------------UGCaGGGCa-----CAGGG------UCGG- -5'
33608 5' -60.6 NC_007605.1 + 13552 0.73 0.375755
Target:  5'- cGcCCGuCCACGgcUCCCGgg-CCCAGCCu -3'
miRNA:   3'- uC-GGCuGGUGC--AGGGCacaGGGUCGG- -5'
33608 5' -60.6 NC_007605.1 + 15815 0.66 0.780055
Target:  5'- gAGCCGACCG-GcCCCGcG-CCUGGCg -3'
miRNA:   3'- -UCGGCUGGUgCaGGGCaCaGGGUCGg -5'
33608 5' -60.6 NC_007605.1 + 16477 0.69 0.60911
Target:  5'- aGGCCGGCCggagggaccccgGCGgCCCGgugucaGUCCCcccugcAGCCg -3'
miRNA:   3'- -UCGGCUGG------------UGCaGGGCa-----CAGGG------UCGG- -5'
33608 5' -60.6 NC_007605.1 + 16621 0.73 0.375755
Target:  5'- cGcCCGuCCACGgcUCCCGgg-CCCAGCCu -3'
miRNA:   3'- uC-GGCuGGUGC--AGGGCacaGGGUCGG- -5'
33608 5' -60.6 NC_007605.1 + 18884 0.66 0.780055
Target:  5'- gAGCCGACCG-GcCCCGcG-CCUGGCg -3'
miRNA:   3'- -UCGGCUGGUgCaGGGCaCaGGGUCGg -5'
33608 5' -60.6 NC_007605.1 + 19546 0.69 0.60911
Target:  5'- aGGCCGGCCggagggaccccgGCGgCCCGgugucaGUCCCcccugcAGCCg -3'
miRNA:   3'- -UCGGCUGG------------UGCaGGGCa-----CAGGG------UCGG- -5'
33608 5' -60.6 NC_007605.1 + 19690 0.73 0.375755
Target:  5'- cGcCCGuCCACGgcUCCCGgg-CCCAGCCu -3'
miRNA:   3'- uC-GGCuGGUGC--AGGGCacaGGGUCGG- -5'
33608 5' -60.6 NC_007605.1 + 22615 0.69 0.60911
Target:  5'- aGGCCGGCCggagggaccccgGCGgCCCGgugucaGUCCCcccugcAGCCg -3'
miRNA:   3'- -UCGGCUGG------------UGCaGGGCa-----CAGGG------UCGG- -5'
33608 5' -60.6 NC_007605.1 + 22759 0.73 0.375755
Target:  5'- cGcCCGuCCACGgcUCCCGgg-CCCAGCCu -3'
miRNA:   3'- uC-GGCuGGUGC--AGGGCacaGGGUCGG- -5'
33608 5' -60.6 NC_007605.1 + 25021 0.66 0.780055
Target:  5'- gAGCCGACCG-GcCCCGcG-CCUGGCg -3'
miRNA:   3'- -UCGGCUGGUgCaGGGCaCaGGGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.