miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33609 3' -57.6 NC_007605.1 + 69050 0.66 0.867999
Target:  5'- gCACGUGGGUUU-CUGCCCccUGUCUc -3'
miRNA:   3'- -GUGCGCCUAGAcGACGGGuaGCAGGu -5'
33609 3' -57.6 NC_007605.1 + 8416 0.66 0.867999
Target:  5'- --aGUGGAguccgCUGCUGUCgG-CGUCCAc -3'
miRNA:   3'- gugCGCCUa----GACGACGGgUaGCAGGU- -5'
33609 3' -57.6 NC_007605.1 + 64453 0.66 0.845118
Target:  5'- cUACGCGGGUCUcaggGCaGCCCugcagCGggCCAg -3'
miRNA:   3'- -GUGCGCCUAGA----CGaCGGGua---GCa-GGU- -5'
33609 3' -57.6 NC_007605.1 + 50622 0.67 0.828915
Target:  5'- --aGCGGAggCUGCUGCgCCggCGgCCAc -3'
miRNA:   3'- gugCGCCUa-GACGACG-GGuaGCaGGU- -5'
33609 3' -57.6 NC_007605.1 + 69403 0.67 0.828915
Target:  5'- -cCGUgGGAUCUGCUGgCCAUC-UCUg -3'
miRNA:   3'- guGCG-CCUAGACGACgGGUAGcAGGu -5'
33609 3' -57.6 NC_007605.1 + 141682 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5'
33609 3' -57.6 NC_007605.1 + 141783 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5'
33609 3' -57.6 NC_007605.1 + 142089 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5'
33609 3' -57.6 NC_007605.1 + 142191 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5'
33609 3' -57.6 NC_007605.1 + 142293 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5'
33609 3' -57.6 NC_007605.1 + 141580 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5'
33609 3' -57.6 NC_007605.1 + 141478 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5'
33609 3' -57.6 NC_007605.1 + 141376 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5'
33609 3' -57.6 NC_007605.1 + 141274 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5'
33609 3' -57.6 NC_007605.1 + 141172 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5'
33609 3' -57.6 NC_007605.1 + 140968 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5'
33609 3' -57.6 NC_007605.1 + 140866 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5'
33609 3' -57.6 NC_007605.1 + 140764 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5'
33609 3' -57.6 NC_007605.1 + 142599 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5'
33609 3' -57.6 NC_007605.1 + 142395 0.67 0.812017
Target:  5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3'
miRNA:   3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.