Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33609 | 3' | -57.6 | NC_007605.1 | + | 154523 | 1.09 | 0.002384 |
Target: 5'- aCACGCGGAUCUGCUGCCCAUCGUCCAg -3' miRNA: 3'- -GUGCGCCUAGACGACGGGUAGCAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 162578 | 0.76 | 0.345889 |
Target: 5'- --aGCGGggCUcgucguccggccGCUGCCCGUCGUCCu -3' miRNA: 3'- gugCGCCuaGA------------CGACGGGUAGCAGGu -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 62933 | 0.72 | 0.535758 |
Target: 5'- -uCGCGGggCUGCUGCCCccuccggcccggCGUCUAa -3' miRNA: 3'- guGCGCCuaGACGACGGGua----------GCAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 110523 | 0.68 | 0.738753 |
Target: 5'- gCGCGCGGAUCcg--GCCUAU-GUCCAc -3' miRNA: 3'- -GUGCGCCUAGacgaCGGGUAgCAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 28463 | 0.67 | 0.794486 |
Target: 5'- gGCGCGGGguccCUGCcugGCaCCAggGUCCGg -3' miRNA: 3'- gUGCGCCUa---GACGa--CG-GGUagCAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 131278 | 0.67 | 0.794486 |
Target: 5'- gGCGCGGGguccCUGCcugGCaCCAggGUCCGg -3' miRNA: 3'- gUGCGCCUa---GACGa--CG-GGUagCAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 141783 | 0.67 | 0.812017 |
Target: 5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3' miRNA: 3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 141885 | 0.67 | 0.812017 |
Target: 5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3' miRNA: 3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 141987 | 0.67 | 0.812017 |
Target: 5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3' miRNA: 3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 142089 | 0.67 | 0.812017 |
Target: 5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3' miRNA: 3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 142191 | 0.67 | 0.812017 |
Target: 5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3' miRNA: 3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 142293 | 0.67 | 0.812017 |
Target: 5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3' miRNA: 3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 141682 | 0.67 | 0.812017 |
Target: 5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3' miRNA: 3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 141580 | 0.67 | 0.812017 |
Target: 5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3' miRNA: 3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 141478 | 0.67 | 0.812017 |
Target: 5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3' miRNA: 3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 141376 | 0.67 | 0.812017 |
Target: 5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3' miRNA: 3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 141274 | 0.67 | 0.812017 |
Target: 5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3' miRNA: 3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 141172 | 0.67 | 0.812017 |
Target: 5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3' miRNA: 3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 140968 | 0.67 | 0.812017 |
Target: 5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3' miRNA: 3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' |
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33609 | 3' | -57.6 | NC_007605.1 | + | 140866 | 0.67 | 0.812017 |
Target: 5'- -cCGCuGGGUCcGCUGCCCcgC-UCCGg -3' miRNA: 3'- guGCG-CCUAGaCGACGGGuaGcAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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