miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33609 5' -55.4 NC_007605.1 + 135221 0.66 0.932447
Target:  5'- gUGguGGGGGUGguggGGGUGGUgggggUGGUg -3'
miRNA:   3'- -ACguCCCCUACa---CUCGCUAga---ACCGu -5'
33609 5' -55.4 NC_007605.1 + 155356 0.66 0.927213
Target:  5'- gGCGGGGGAUG-GcGCGGc---GGCAg -3'
miRNA:   3'- aCGUCCCCUACaCuCGCUagaaCCGU- -5'
33609 5' -55.4 NC_007605.1 + 151040 0.66 0.927213
Target:  5'- aGcCAGGGagagcGAUGUGGGCGAggaugGGCu -3'
miRNA:   3'- aC-GUCCC-----CUACACUCGCUagaa-CCGu -5'
33609 5' -55.4 NC_007605.1 + 158611 0.66 0.910051
Target:  5'- gGCGGGGGGUGcGGGCuGcUCUggGGUc -3'
miRNA:   3'- aCGUCCCCUACaCUCG-CuAGAa-CCGu -5'
33609 5' -55.4 NC_007605.1 + 68996 0.66 0.910051
Target:  5'- --gAGGGGccGUGuucaggagcuGGCaGAUCUUGGCAu -3'
miRNA:   3'- acgUCCCCuaCAC----------UCG-CUAGAACCGU- -5'
33609 5' -55.4 NC_007605.1 + 58222 0.67 0.883817
Target:  5'- gGCAGGgaaugagucGGAUGUGAaaGAUCgagagGGCAg -3'
miRNA:   3'- aCGUCC---------CCUACACUcgCUAGaa---CCGU- -5'
33609 5' -55.4 NC_007605.1 + 41527 0.67 0.876681
Target:  5'- gGCAGGGGcUGuUGGGUGcAUCUggaacGGCu -3'
miRNA:   3'- aCGUCCCCuAC-ACUCGC-UAGAa----CCGu -5'
33609 5' -55.4 NC_007605.1 + 153779 0.68 0.861746
Target:  5'- gGCuccGGGuGGUGUGGGCGGcCagGGCAu -3'
miRNA:   3'- aCGu--CCC-CUACACUCGCUaGaaCCGU- -5'
33609 5' -55.4 NC_007605.1 + 109241 0.68 0.853959
Target:  5'- aGCGGGGaGGUGcucGCGGUCUcUGGCc -3'
miRNA:   3'- aCGUCCC-CUACacuCGCUAGA-ACCGu -5'
33609 5' -55.4 NC_007605.1 + 164275 0.68 0.853169
Target:  5'- cGuCAcGGGGAacUGAcgucucaGCGAUCUUGGCAu -3'
miRNA:   3'- aC-GU-CCCCUacACU-------CGCUAGAACCGU- -5'
33609 5' -55.4 NC_007605.1 + 40160 0.68 0.845967
Target:  5'- gGCAGGGGGgggggcaGUGAGgGAgg--GGCGu -3'
miRNA:   3'- aCGUCCCCUa------CACUCgCUagaaCCGU- -5'
33609 5' -55.4 NC_007605.1 + 171595 0.68 0.829398
Target:  5'- cGgGGGGGGUGUuGGCGGg---GGCAu -3'
miRNA:   3'- aCgUCCCCUACAcUCGCUagaaCCGU- -5'
33609 5' -55.4 NC_007605.1 + 109520 0.68 0.820835
Target:  5'- gGCGGGGGAgaggGUGAagaaaGCGGUggUGGUc -3'
miRNA:   3'- aCGUCCCCUa---CACU-----CGCUAgaACCGu -5'
33609 5' -55.4 NC_007605.1 + 167261 0.68 0.820835
Target:  5'- cGCAGGGGcguugGUG-GCGGagUCU-GGCAa -3'
miRNA:   3'- aCGUCCCCua---CACuCGCU--AGAaCCGU- -5'
33609 5' -55.4 NC_007605.1 + 26057 0.69 0.794131
Target:  5'- aGCGGGGGAaGgcaGGCGAcaaUUGGCAc -3'
miRNA:   3'- aCGUCCCCUaCac-UCGCUag-AACCGU- -5'
33609 5' -55.4 NC_007605.1 + 38294 0.69 0.784921
Target:  5'- gGCuGGGGAUGgggaGGGCGGggcUGGCGc -3'
miRNA:   3'- aCGuCCCCUACa---CUCGCUagaACCGU- -5'
33609 5' -55.4 NC_007605.1 + 135272 0.7 0.766089
Target:  5'- gUGgGGGGGGUGguggGAGUGGUgggGGCAc -3'
miRNA:   3'- -ACgUCCCCUACa---CUCGCUAgaaCCGU- -5'
33609 5' -55.4 NC_007605.1 + 138387 0.7 0.754552
Target:  5'- uUGCGGGGGAUgGUGAGCcagacacGGCGg -3'
miRNA:   3'- -ACGUCCCCUA-CACUCGcuagaa-CCGU- -5'
33609 5' -55.4 NC_007605.1 + 63079 0.7 0.746771
Target:  5'- -cCGGGGGAgGUG-GCGGUCgccgggggUGGCAg -3'
miRNA:   3'- acGUCCCCUaCACuCGCUAGa-------ACCGU- -5'
33609 5' -55.4 NC_007605.1 + 135176 0.7 0.71705
Target:  5'- gUGguGGGGGUGguggGGGCGGgggUGGUg -3'
miRNA:   3'- -ACguCCCCUACa---CUCGCUagaACCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.