miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 50527 0.66 0.847105
Target:  5'- -gGGGuGUGCGCCgg-GGCGgCCaaGCCg -3'
miRNA:   3'- cgUCC-UACGCGGauaUCGC-GGgcCGG- -5'
33610 3' -58.6 NC_007605.1 + 65501 0.66 0.847105
Target:  5'- cCAGGGauauggccuccaUGgGCCUcgggGUgcAGgGCCUGGCCg -3'
miRNA:   3'- cGUCCU------------ACgCGGA----UA--UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 167261 0.66 0.847105
Target:  5'- cGCAGGG-GCGUUgGUGGCggaGUCUGGCa -3'
miRNA:   3'- -CGUCCUaCGCGGaUAUCG---CGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 63324 0.66 0.847105
Target:  5'- gGCAGGuggGgGCCUGacGCGgaUGGCCa -3'
miRNA:   3'- -CGUCCua-CgCGGAUauCGCggGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 111511 0.66 0.847105
Target:  5'- aGCuGGGAUacaGCCUGacgGGCGCCCucaGGCg -3'
miRNA:   3'- -CG-UCCUAcg-CGGAUa--UCGCGGG---CCGg -5'
33610 3' -58.6 NC_007605.1 + 170184 0.66 0.839214
Target:  5'- uCGGGggGCGCCgcgcgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua--UCGCGggcCGG- -5'
33610 3' -58.6 NC_007605.1 + 136862 0.66 0.839214
Target:  5'- aCAGGcccUGCGCCgggAGaCGCUguccuaCGGCCa -3'
miRNA:   3'- cGUCCu--ACGCGGauaUC-GCGG------GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 170706 0.66 0.839214
Target:  5'- uCGGGggGCGCCgcgcgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua--UCGCGggcCGG- -5'
33610 3' -58.6 NC_007605.1 + 35164 0.66 0.839214
Target:  5'- cGUAGGAagGCGCg-GUGGCuauuGCCUGGUg -3'
miRNA:   3'- -CGUCCUa-CGCGgaUAUCG----CGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 171244 0.66 0.839214
Target:  5'- uCGGGggGCGCCgcgcgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua--UCGCGggcCGG- -5'
33610 3' -58.6 NC_007605.1 + 40214 0.66 0.838415
Target:  5'- gGCAGGggGUccccauggcacagGCCUAgggguccagggGGCaGCCgCGGCCc -3'
miRNA:   3'- -CGUCCuaCG-------------CGGAUa----------UCG-CGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 38298 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 21616 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 18547 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 15478 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 12409 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 39547 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 39297 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 39172 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 38798 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.