miRNA display CGI


Results 1 - 20 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 38673 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 18547 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 21616 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 24685 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 27754 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 30823 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 33892 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 38298 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 38423 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 15478 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 12409 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 52869 0.66 0.8229
Target:  5'- aGUAGGAgucgGCGgCggcGGCGCUgGGCg -3'
miRNA:   3'- -CGUCCUa---CGCgGauaUCGCGGgCCGg -5'
33610 3' -58.6 NC_007605.1 + 39172 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 111511 0.66 0.847105
Target:  5'- aGCuGGGAUacaGCCUGacgGGCGCCCucaGGCg -3'
miRNA:   3'- -CG-UCCUAcg-CGGAUa--UCGCGGG---CCGg -5'
33610 3' -58.6 NC_007605.1 + 39047 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 39422 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 38798 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 160600 0.66 0.814491
Target:  5'- aGgAGGAUG-GCCUcca--GCUCGGCCa -3'
miRNA:   3'- -CgUCCUACgCGGAuaucgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 39297 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 169647 0.66 0.805925
Target:  5'- uCGGGggGCGCCgccgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua-UCGCGggcCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.