miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 102243 0.67 0.78835
Target:  5'- --uGGAucUGCGCCaccggcAUGGUGCCC-GCCg -3'
miRNA:   3'- cguCCU--ACGCGGa-----UAUCGCGGGcCGG- -5'
33610 3' -58.6 NC_007605.1 + 58934 0.67 0.770238
Target:  5'- gGCGGGAg--GUCagggGGCGgCCGGCCa -3'
miRNA:   3'- -CGUCCUacgCGGaua-UCGCgGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 113801 0.67 0.770238
Target:  5'- cGCAGGAUGUuCaCgugGGC-CCCGGCa -3'
miRNA:   3'- -CGUCCUACGcG-GauaUCGcGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 91741 0.67 0.770238
Target:  5'- cGCAGGcgcgGgGCCUc-GGC-CCUGGCCu -3'
miRNA:   3'- -CGUCCua--CgCGGAuaUCGcGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 61474 0.67 0.76932
Target:  5'- cGCuGG-UGCGCCg--GGCucgucuguccacgGCCuCGGCCu -3'
miRNA:   3'- -CGuCCuACGCGGauaUCG-------------CGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 116561 0.68 0.742213
Target:  5'- -aAGGAggUGCagGCCU--GGCGCCUggaGGCCg -3'
miRNA:   3'- cgUCCU--ACG--CGGAuaUCGCGGG---CCGG- -5'
33610 3' -58.6 NC_007605.1 + 137287 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 48678 0.68 0.732676
Target:  5'- aGCAGGc----CCUGauGCGCCUGGCCg -3'
miRNA:   3'- -CGUCCuacgcGGAUauCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 12771 0.68 0.72209
Target:  5'- -gGGGGcgguccuugauccUGCGCCg--GGCGgacgcggucagcCCCGGCCa -3'
miRNA:   3'- cgUCCU-------------ACGCGGauaUCGC------------GGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 168912 0.68 0.713362
Target:  5'- cGCccuGGucUGaaagGCCUGuUGGCGCCgGGCCg -3'
miRNA:   3'- -CGu--CCu-ACg---CGGAU-AUCGCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 12188 0.68 0.703602
Target:  5'- cGCaAGGAgcaguaccUGCGCCagGUGGCcaccgaggGUCUGGCCa -3'
miRNA:   3'- -CG-UCCU--------ACGCGGa-UAUCG--------CGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 111317 0.68 0.6928
Target:  5'- cCAGGAUGUgugccgggacgccGCCgccagGUGG-GCCCuGGCCa -3'
miRNA:   3'- cGUCCUACG-------------CGGa----UAUCgCGGG-CCGG- -5'
33610 3' -58.6 NC_007605.1 + 149563 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 146494 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 143425 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 158769 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 152632 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 155700 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 140356 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 141706 0.69 0.66407
Target:  5'- gGCGGGggGUGCCggcuGCaGCCgGGUCc -3'
miRNA:   3'- -CGUCCuaCGCGGauauCG-CGGgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.