Results 81 - 100 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 60257 | 0.69 | 0.642127 |
Target: 5'- cCAGGAgGCGCCUucugaggGUGGCcgugucgGCCgUGGCCa -3' miRNA: 3'- cGUCCUaCGCGGA-------UAUCG-------CGG-GCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 158907 | 0.69 | 0.644124 |
Target: 5'- uUAGGAcG-GCCUcgcgcAGCGCCCGGCa -3' miRNA: 3'- cGUCCUaCgCGGAua---UCGCGGGCCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 154153 | 0.69 | 0.66407 |
Target: 5'- aGCAGcuucuuGAUG-GCCUu--GCGCuuGGCCa -3' miRNA: 3'- -CGUC------CUACgCGGAuauCGCGggCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 141706 | 0.69 | 0.66407 |
Target: 5'- gGCGGGggGUGCCggcuGCaGCCgGGUCc -3' miRNA: 3'- -CGUCCuaCGCGGauauCG-CGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 78326 | 0.69 | 0.683918 |
Target: 5'- cCGGuGAUGCGCCUGacguuGUGCC-GGCUg -3' miRNA: 3'- cGUC-CUACGCGGAUau---CGCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 110345 | 0.69 | 0.654105 |
Target: 5'- uGCuauGGGUccgcuacaGcCGCCUGUGGCaggcCCCGGCCc -3' miRNA: 3'- -CGu--CCUA--------C-GCGGAUAUCGc---GGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 107479 | 0.69 | 0.634134 |
Target: 5'- -aAGGcgGUGgagcaGGCGCCCGGCCa -3' miRNA: 3'- cgUCCuaCGCggauaUCGCGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 13473 | 0.69 | 0.634134 |
Target: 5'- aCGGGGUGCGCCgcUA-CGCCa-GCCa -3' miRNA: 3'- cGUCCUACGCGGauAUcGCGGgcCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 101830 | 0.7 | 0.574408 |
Target: 5'- --uGGAcgagaGCGCCUcUGGCGCCCucggcuccucGGCCa -3' miRNA: 3'- cguCCUa----CGCGGAuAUCGCGGG----------CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 52948 | 0.7 | 0.594229 |
Target: 5'- uGCGGGGgaccaauaGCUUGggGGCGUCCGGCUg -3' miRNA: 3'- -CGUCCUacg-----CGGAUa-UCGCGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 121594 | 0.7 | 0.604183 |
Target: 5'- aGCAGcGucccauUGCGCUg--AGCGCCCaccuuGGCCu -3' miRNA: 3'- -CGUC-Cu-----ACGCGGauaUCGCGGG-----CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 67971 | 0.7 | 0.614156 |
Target: 5'- cGCccuGAUGC-CCUAUAuGCcCCCGGCCa -3' miRNA: 3'- -CGuc-CUACGcGGAUAU-CGcGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 37364 | 0.7 | 0.624142 |
Target: 5'- gGC-GGAaaaGCGUCUGgacuggauaGGCGCCCGGCa -3' miRNA: 3'- -CGuCCUa--CGCGGAUa--------UCGCGGGCCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 37447 | 0.7 | 0.614156 |
Target: 5'- aGCAGGGacgauaggUGUagacGCCggGUGGcCGCCuCGGCCa -3' miRNA: 3'- -CGUCCU--------ACG----CGGa-UAUC-GCGG-GCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 126671 | 0.7 | 0.584302 |
Target: 5'- uGCuGGAUGUGCC-AUgccccaggcuaAGgGCCUGGCUg -3' miRNA: 3'- -CGuCCUACGCGGaUA-----------UCgCGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 112028 | 0.71 | 0.544984 |
Target: 5'- gGCAGGAacGCGagca-AGCGCCgGGCCa -3' miRNA: 3'- -CGUCCUa-CGCggauaUCGCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 50381 | 0.71 | 0.564553 |
Target: 5'- -gAGGAcggGCGCCggccgccAGCGCCCccguGGCCu -3' miRNA: 3'- cgUCCUa--CGCGGaua----UCGCGGG----CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38921 | 0.71 | 0.554743 |
Target: 5'- aGCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- -CGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 72472 | 0.71 | 0.544984 |
Target: 5'- cGCGGGAgccgGCgGCCUcggaGGUGCCCGGgUg -3' miRNA: 3'- -CGUCCUa---CG-CGGAua--UCGCGGGCCgG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 117923 | 0.71 | 0.564553 |
Target: 5'- aGCuGGggGCGCg---GGUGCCUGGCUg -3' miRNA: 3'- -CGuCCuaCGCGgauaUCGCGGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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